Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03718 ATGGCTACCGATAGAATTTTCAAGCCTTCCAAATGGTTCTCCAACAAGAGTCTTAGGTTAAGCCTTCGTCGCCCGAGATCAAGATCCTCCAACTCATCATCACAATCCTCAACTGCGTCTCCACGATCTCCCATGTCAACATGCACAACCCCAAAGAAGGGAGAGATGAACGGGCTGGTGGAGGCTTTTCGCCACTTGGACGGTGATGGAGATGGGAAAATCTCGGCCTATGAGCTAAGGTCGTATTTTGGATCCATTGGGGAGCAGGTGTCTCACGAGGACGTTGAAGGGGTCATCCATGACCTCGATTCTGATGGGGATAACATGCTGGACTTGCAGGATTTCACGAAGCTGATGAAGAGAGATGGTGGTGATGGTGATGAGCGGGATCTACGAAAGGCTTTTGAGATGTTTGTGTGGGAGAAAGAAGGGTGTGGTTGCATCACCCCGAAGGGGTTGCAGAGGATGTTGCACCGTCTTGGAGATGATAGGTCCTATGATGACTGTGTTGCAATGATCGGTGCCTTTGATATTGATCACAACGGTGTTCTTGATTTCGATGAGTTTTACCAGATGATGGCTTAG 585 0.4889 MATDRIFKPSKWFSNKSLRLSLRRPRSRSSNSSSQSSTASPRSPMSTCTTPKKGEMNGLVEAFRHLDGDGDGKISAYELRSYFGSIGEQVSHEDVEGVIHDLDSDGDNMLDLQDFTKLMKRDGGDGDERDLRKAFEMFVWEKEGCGCITPKGLQRMLHRLGDDRSYDDCVAMIGAFDIDHNGVLDFDEFYQMMA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03718 194 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Viun3g03718 194 ProSiteProfiles EF-hand calcium-binding domain profile. 90 125 IPR002048 GO:0005509
Viun3g03718 194 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Viun3g03718 194 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Viun3g03718 194 PANTHER CALCIUM BINDING PROTEIN 110 193 - -
Viun3g03718 194 MobiDBLite consensus disorder prediction 18 54 - -
Viun3g03718 194 SMART efh_1 168 194 IPR002048 GO:0005509
Viun3g03718 194 SMART efh_1 58 86 IPR002048 GO:0005509
Viun3g03718 194 SMART efh_1 94 122 IPR002048 GO:0005509
Viun3g03718 194 FunFam Calmodulin-2 A 49 194 - -
Viun3g03718 194 CDD EFh 130 194 IPR002048 GO:0005509
Viun3g03718 194 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Viun3g03718 194 MobiDBLite consensus disorder prediction 24 53 - -
Viun3g03718 194 ProSiteProfiles EF-hand calcium-binding domain profile. 164 194 IPR002048 GO:0005509
Viun3g03718 194 Gene3D - 124 194 - -
Viun3g03718 194 Gene3D - 44 123 - -
Viun3g03718 194 SUPERFAMILY EF-hand 43 193 IPR011992 -
Viun3g03718 194 Pfam EF-hand domain pair 146 193 IPR002048 GO:0005509
Viun3g03718 194 Pfam EF-hand domain pair 59 120 IPR002048 GO:0005509
Viun3g03718 194 CDD EFh 59 120 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03718 Viun-Chr3 44212514 44213616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03718 1 194 EF-hand Containing Proteins AT3G50770 50.000 7.67e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03718 K13448 - gmx:100306370 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03718 3 44212514 44213616 Viun3g03718 3 44212514 44213616 ECH