Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03687 ATGTTCCTTCTTAGAAGGCAAGGCCAAAATCAGCTGGAGAATGATTCCTCAAAACAAGATACAAAGGTGAATGAACTCAGGGCTGCTCTTGGGCCCCTCTCTGGTCGTCGACTACTGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCAAGAAATTGGAATGTTGATAAAGCAAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAAGAAATCCGTTGGGCTGAAGTAGCACATGAGGGTGAGACCGGTAAAGTCTCCAGAGCTAGCTTTCGTGATCGACTTGGGAGGACTGTGCTTATTATGAGGCCAGGAATGCAGAACACAACATCAGCTGAAGATAATATCAGGCATTTAGTCTATCTATTGGAAAATGCTATCCTAAATCTTCCGGAAGGTCAAGAACAAATGTCGTGGTTGATAGACTACACAGGATTATCACTGAATACAAATATTTCTGTTAAAACAGCTCGTGATATTATTCACATTTTACAGAACCACTATCCAGAAAGGCTTGCTATTGCTTTCCTGTACAATCCACCAAGAATATTTCAGGCTTTCTGGAAGGCCGTGAAGTTTTTCCTGGATCCAAAGACAGTCCAGAAGGTGAAGTTTGTTTATCCTAATAATAAGGACAGTGTGGAGCTAATGCAATCACTATTCGACCTAGAAAACCTTCCAAGTGAATTTGGAGGGAAAACAAGTTTAATGTACGACCATGAAGAGTTCTCACGGTTGATGAGTGAGGATGATGTGAAAACTGCTAAGTTCTGGGGACTAGACCAGAAGCCTTTCAACCTTCCTAAGAAAGGACATGCTGGAGCAGAGGTAGCACCAGAACCCGTGTCTGTTCAGACAGTAGTTAATTAG 891 0.422 MFLLRRQGQNQLENDSSKQDTKVNELRAALGPLSGRRLLYCTDACLRRYLEARNWNVDKAKKMLEETLKWRATYKPEEIRWAEVAHEGETGKVSRASFRDRLGRTVLIMRPGMQNTTSAEDNIRHLVYLLENAILNLPEGQEQMSWLIDYTGLSLNTNISVKTARDIIHILQNHYPERLAIAFLYNPPRIFQAFWKAVKFFLDPKTVQKVKFVYPNNKDSVELMQSLFDLENLPSEFGGKTSLMYDHEEFSRLMSEDDVKTAKFWGLDQKPFNLPKKGHAGAEVAPEPVSVQTVVN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03687 296 Pfam CRAL/TRIO domain 99 239 IPR001251 -
Viun3g03687 296 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Viun3g03687 296 CDD SEC14 99 240 IPR001251 -
Viun3g03687 296 SMART sec14_4 87 242 IPR001251 -
Viun3g03687 296 FunFam Phosphatidylinositol transfer protein 3 3 273 - -
Viun3g03687 296 Pfam CRAL/TRIO, N-terminal domain 41 66 IPR011074 -
Viun3g03687 296 PRINTS Cellular retinaldehyde-binding protein signature 45 67 - -
Viun3g03687 296 PRINTS Cellular retinaldehyde-binding protein signature 90 114 - -
Viun3g03687 296 PRINTS Cellular retinaldehyde-binding protein signature 162 183 - -
Viun3g03687 296 PRINTS Cellular retinaldehyde-binding protein signature 231 240 - -
Viun3g03687 296 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g03687 296 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Viun3g03687 296 SUPERFAMILY CRAL/TRIO domain 82 256 IPR036865 -
Viun3g03687 296 SUPERFAMILY CRAL/TRIO N-terminal domain 9 82 IPR036273 -
Viun3g03687 296 Gene3D - 4 269 IPR036865 -
Viun3g03687 296 PANTHER GH16843P 9 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03687 Viun-Chr3 43753307 43757104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03687 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.751 6.50e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03687 K26544 - gmx:100800024 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03687 3 43753307 43757104 Viun3g03687 3 43753307 43757104 ECH