Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03648 ATGTCCTTCTTTTCCTCTTCAACGCCCGATTCAAACCTCGCCACCGCGAAGACGGTCCTCTCCACGGCGGCATCGGTGGCCGCCACCGCAATGGTAATCCGTTCGGTAGCCAGCGAGATCCTCCCACCGGAGTTCATGTCGTACGTCAGAGATGGCCTCCGCAGCGCGCTGTCGCGGTTCTCATCGGAGACAACGATGGTGATCGAGGAGTTCGACGGCCTCGTGAGCAACCAAATCTACGAGGCGGCGGAGACCTACCTGGGCTCCAGAATCTCCCCCTCCACGCAGAGACTCAAGGTGACCAAACCCGAAACCGACGACACCTTCATCCTCACAATGGAGCGCAACGAGTGCCTGGACGACGTGTTTAACGGCGTCAAGTTTAACTGGGTCCTGGTGTGCCGTCAAGTGGAGACACGACACTTCCACAACCCGCGCGACATGAACGCCACTTTGAAATCGGAGGTTCGGTCCTTGGAACTGAGCTTCCACAAGAAGCACAAAGACATGGTCCTCAACACCTACCTTCCCTTCATTATGAAGGAGGCCAAGTCCTTGAAGCAGGAGACGAAGGCCTTGAAGATCTTCACCGTGGATTACCACTGCATGTACGGAAACCCCAACGACGCCTGGACTGGGATCAATCTGGACCACCCGGCGACGTTTGAGACGGTGGCTATGGAGCGTGACGTGAAGGAGTTTGTGGTGAGGGATTTGGAGAGGTTTGTGGCGAGGAAGGAGTATTATAGAAAAGTTGGGAAGGCATGGAAGAGAGGGTACTTGCTCTATGGACCTCCCGGTACAGGCAAATCCAGTTTGATTGCTGCTATGGCTAATTACTTGCGCTTTGATGTCTATGACTTGGAGCTCACCGAGTTGCAGACCAATTCCGATCTCAGGAGATTACTCATTGCCATGCCTAATAGGTCCATTCTCGTTGTTGAGGACATTGATTGCACTATTGAGTTTCACGATCGCAGAGCGGAGCCCACACACTTTTCGCCCTTTTCCTCTGCAAATAATAACGACAGACAGGTTACACTGTCGGGGTTGCTGAATTTCGTTGACGGGTTATGGTCAAGTTGTGGAGACGAGAGGATAATAGTGTTCACAACGAACCACAAGGAGAAGCTTGACCCTGCGTTGCTCCGCCCTGGTCGCATGGATGTTCATATTCACATGTCCTATTGCACTCCCTGCGGTTTTAGGCAGCTATGTTCCAATTACCTCGGACTCAAAGAACATGATCTCTTCCCACAGATTGAGGAAGAAATTCAGAAAACCCAGGTGACTCCAGCTGAAGTGGCAGAACAGCTTCTGAAGAGCAACGACACTGAAACTTGTCTTAAACAGCTTATAGATTTCCTAAGAAAAAAGAAAGAAACACAGGAGGAGCTGGAGGCTAAAACGAAGGAACAGGAGGCCAAAGATAAAGAGGAACGGCAGAAGAAGGAGCTCGATGATGGTGGTAAAGAAGGGGTTGATAATGACGAAAAGAAAAGTACAACTTAA 1512 0.5106 MSFFSSSTPDSNLATAKTVLSTAASVAATAMVIRSVASEILPPEFMSYVRDGLRSALSRFSSETTMVIEEFDGLVSNQIYEAAETYLGSRISPSTQRLKVTKPETDDTFILTMERNECLDDVFNGVKFNWVLVCRQVETRHFHNPRDMNATLKSEVRSLELSFHKKHKDMVLNTYLPFIMKEAKSLKQETKALKIFTVDYHCMYGNPNDAWTGINLDHPATFETVAMERDVKEFVVRDLERFVARKEYYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDVYDLELTELQTNSDLRRLLIAMPNRSILVVEDIDCTIEFHDRRAEPTHFSPFSSANNNDRQVTLSGLLNFVDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHIHMSYCTPCGFRQLCSNYLGLKEHDLFPQIEEEIQKTQVTPAEVAEQLLKSNDTETCLKQLIDFLRKKKETQEELEAKTKEQEAKDKEERQKKELDDGGKEGVDNDEKKSTT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03648 503 Pfam Domain associated at C-terminal with AAA 41 134 IPR025753 -
Viun3g03648 503 PANTHER BCS1 AAA-TYPE ATPASE 21 464 - -
Viun3g03648 503 SMART AAA_5 256 398 IPR003593 GO:0016887
Viun3g03648 503 MobiDBLite consensus disorder prediction 463 503 - -
Viun3g03648 503 Coils Coil 449 488 - -
Viun3g03648 503 ProSitePatterns AAA-protein family signature. 366 384 IPR003960 GO:0005524|GO:0016887
Viun3g03648 503 Gene3D - 212 392 IPR027417 -
Viun3g03648 503 CDD RecA-like_BCS1 235 394 - -
Viun3g03648 503 Pfam ATPase family associated with various cellular activities (AAA) 261 395 IPR003959 GO:0005524|GO:0016887
Viun3g03648 503 Gene3D - 393 472 - -
Viun3g03648 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 464 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03648 Viun-Chr3 43319518 43321893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03648 221 478 Miscellaneous Gene Families AT3G47060 27.007 3.22e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03648 - K08900 gmx:100788420 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03648 3 43319518 43321893 Viun3g03648 3 43319518 43321893 ECH