Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03618 ATGCTCTCTCTCACACTCACTTCCCTTCACCTTCACATTCACCACTTTCTAATTCTCTCACTGTTCCTAACCCCATTCGTTACCGATTCAGCCACGCATTGGAGCGACACCCAGTTTCTCAAAGAACTAAAGAACAACCTTCACCCTGTTTCCGTTACCCCAGGCTCCTGCATCTTCTCCTGGGACTTCTCCTATGATCCCTGCGACAACCTTTTCACCGACAAGTTCACGTGCGGCTTCAGGTGCGACGCCGTCGTTTCCGGAACCACTCGACTCACCGAACTCACACTCGACCCCGCTGGTTACTCCGGCACGCTCTCCGCCGCCACCTGGAACCTCCCCTACCTCCAAACTCTTGACGTCTCAAACAACTTCTTCTCAGGCCAAATCCCCGACTCCTTCTCCAACCTCACTCGGTTAACTCGACTCGGTTTATCGAAAAACTTCCTCACCGGAACTATACCCTCTTCCTTATCCTCCCTCTCTAACCTTCAAGAGCTTTACCTCGACAACAACAACCTCCAAGGACCGATCCCCGTCTCTTTTAACCGCCTCACCAACCTTAAACGCCTCGAAATGCAGTCCAACAAGCTAAACGGCGTCGTTCCCGGTTTGAGCTCTCTGAACAATCTTTACTTCTTGGACCTAAGTTTCAATCTTTTCACCGGAGGGTTCCCCTCCGGGCTGCCGGAATCTCTGGTTCAGATTTCAATGCGGAACAACAGCTTAAGCGGCGCGTTGGAACCCGAATCTCTGAGGAACTTGAACTACTTGGAAGTGGTGGATTTGAGTGGCAACAGGTTAACCGGCGCCGTTCCGTTTGCGCTGTTCGAGCTTCCCTCGTTGCAGCAGGTGACGCTCTCTTTCAACGAGTTCTCGCACATGGAAGCGCCTTACGCTTTGGAAATGCGAAGCGGGGTTATAGCGGTTGATCTGAGCGACAACGAGCTTGGGGGGTTTCTGCCGTTGTTCCCGGCGTTGATGCCGAGGCTTTCGTCTCTGTCGTTGGAGAACAACAGGTTCGTGGGAATGATTCCGACCCAGTACGCGTTGAAGACCGTTTTCCCCGAGGCTGGGATAGCTCCGTTTGAGAGGCTTCTATTGGGGGGAAACTACTTGTTTGGAGCTATTCCGAGTCCTCTAATGGCGCTTCAACCGGGTTCTGCCATGGTGAGGCTTGTGGATAATTGCTTGTATAGGTGTCCTATCAGTTTCTTCTTTTGTCAGGGAGGCCAACAAAAATCATTTGAAGAATGTAAGAGATTTAGCCGCTTCATTCCCTAG 1284 0.5171 MLSLTLTSLHLHIHHFLILSLFLTPFVTDSATHWSDTQFLKELKNNLHPVSVTPGSCIFSWDFSYDPCDNLFTDKFTCGFRCDAVVSGTTRLTELTLDPAGYSGTLSAATWNLPYLQTLDVSNNFFSGQIPDSFSNLTRLTRLGLSKNFLTGTIPSSLSSLSNLQELYLDNNNLQGPIPVSFNRLTNLKRLEMQSNKLNGVVPGLSSLNNLYFLDLSFNLFTGGFPSGLPESLVQISMRNNSLSGALEPESLRNLNYLEVVDLSGNRLTGAVPFALFELPSLQQVTLSFNEFSHMEAPYALEMRSGVIAVDLSDNELGGFLPLFPALMPRLSSLSLENNRFVGMIPTQYALKTVFPEAGIAPFERLLLGGNYLFGAIPSPLMALQPGSAMVRLVDNCLYRCPISFFFCQGGQQKSFEECKRFSRFIP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03618 427 SUPERFAMILY L domain-like 65 352 - -
Viun3g03618 427 Gene3D Ribonuclease Inhibitor 35 203 IPR032675 -
Viun3g03618 427 Gene3D Ribonuclease Inhibitor 204 420 IPR032675 -
Viun3g03618 427 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Viun3g03618 427 Pfam Leucine rich repeat 233 291 IPR001611 GO:0005515
Viun3g03618 427 SMART LRR_typ_2 279 303 IPR003591 -
Viun3g03618 427 SMART LRR_typ_2 113 136 IPR003591 -
Viun3g03618 427 SMART LRR_typ_2 161 184 IPR003591 -
Viun3g03618 427 SMART LRR_typ_2 185 208 IPR003591 -
Viun3g03618 427 FunFam Nuclear pore complex protein NUP107 35 204 - -
Viun3g03618 427 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 12 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03618 Viun-Chr3 42902669 42904342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03618 78 385 Receptor kinase-like Gene Family AT5G62230 33.228 1.14e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03618 - - gmx:100787530 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03618 3 42902669 42904342 Viun3g03618 3 42902669 42904342 ECH