Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03617 ATGGTAGTAGTCATGATGTTGCTTCTCATTTTGTCATCTCTTACCTCAATTTCGGAGCCATGTCACGTGGTGGACAAAGAAGCACTACTAGAATTCAAGAGCAGGATCATCTCTGACCCTTCAAAACTGCTAGATTCCTGGACACCTTCCTCTGACTGCTGCCACACTTGGGAGGGCATCGCATGTGGTTCCACTGGCAGGGTCATCAACCTTACTAGAATCGGCGTTGTGTTCGACGTTGATGACATCCCTCTCGAAACCTACATGTCAGGAACCTTGTCACCTTATCTTGGAAACTTGTCTGCTCTTCAAGTTTTGGACCTTAGCAATCTGAAGCAGTTGCATGGTCCAATACCTCCACAACTCGCCAAGCTATCCCATTTGACAAAACTTTTTCTCTATTCAAACCAGCTCTCAGGTGGGGTTCCCGCGTCTTTTGAAAAGCTTTCACGGCTCCAGAGTTTGTACCTCGATAACAACCAATTGTTTGGTAATGTTCCTTTTTCTGTCTTTGCCTCCTTCAAGTCTCTTTCAGAACTTGGTCTATCTGGGAACAGGCTTTCTGGGGGGATTCCTTCTTCCCTTGGAAGAATGGTATTTCTCACCAGGCTTCACCTTCATCAAAACGATTTTCATGGAAACATTCCTTCTACCATTGGAAATCTTGTAAACCTCAAGGATTTGGATTTCTCTTATAACCAGATTAGTGGAAGAATCCCAGAGTCAATTGGGAGACTCTCACAATTGGTTTTTCTGGATCTCATGCACAATAATCTCTCAGGAAACCTCCCTTTTTCTATTGGGGATTTAAGTTCTCTCAAGTTTTGTAGTTTATCAGAGAACAAGCTAACAGGCCTTTTGCCTTATTCCATTGGAAAACTCGGCAATGTGCGAAGGGTAATCCTTGAGAACAATAAACTCACTGGGAACTTACCTTCCACCATTGGCCATCTAACTAGTTTAACTGATTTATTTCTCGCAGACAATGAATTCAGTGGCAAAATTCCACCTTCCTTTGGCAATTTAATCAACCTGCAAACACTGGATTTGTCAAGAAACCAACTTTCTGGTCTACTTCCCCCTCAACTTGCTAAACTACAGAGTTTGCAAACTTTAGACTTGTCATTCAACCCATTAGGACTAGCCAAAGTACCCAAGTGGGTTTCCAAGTCTAGAGTTTTTCAGTTGAAATTGGCTCAGACAGGGATCAAAGGTCAACTTCCAAAGTGGCTTGCATATTCATCAGTGTCAACCCTTGATTTGTCAAGCAATGCATTAACGGGGAAATTGCCATGGTGGATCGGAAACATGACTCGCCTTTCCTTCCTGAACCTGTCAAACAACCAGTTTCATTCGTCAATCCCTGTGGCATTCATGGGTCTTTCTTCTCTGATGGACCTTGACCTCCATTCCAATAACCTCACAGGGTCCCTAAAAGTGGTGTTTGAGAAAGAGGCTCAATTTTCGCTAGGCCATTTCAACTCCCTCGACCTATCTAACAACAAGTTTTGCGGTCCCATTGACGACAACATTGGACAAAAGGCCTCAATGAGTTCAATCAAATCTCTTGCTTTGTCACACAACCCGTTGGGAGGATCGATACCAAAGTCAATTGGGAAACTGAGAGAATTGGAGATTCTGGAGCTTGAAGACAGTGGACTCTCGGGGGATATACCCGAAGAGCTTGGTGATGCCGAAACTTTAACAAAGATTAATCTTTCAAACAACAAATTAAGTGGCAACATACCAGAGAAGGTCCTAAATTTGAAGAAGCTTGAAGAGTTTGATGTGTCAAGAAACAGACTCAGAGGGAGGATCCCTCCACATAAGGCCATGTTTCCTATTTCAGCTTTTGTGGGTAATCGTGGATTGTGTGGACCACCTCTTCCTCCTTGTAAACTTCGTTATAGATGA 1914 0.4326 MVVVMMLLLILSSLTSISEPCHVVDKEALLEFKSRIISDPSKLLDSWTPSSDCCHTWEGIACGSTGRVINLTRIGVVFDVDDIPLETYMSGTLSPYLGNLSALQVLDLSNLKQLHGPIPPQLAKLSHLTKLFLYSNQLSGGVPASFEKLSRLQSLYLDNNQLFGNVPFSVFASFKSLSELGLSGNRLSGGIPSSLGRMVFLTRLHLHQNDFHGNIPSTIGNLVNLKDLDFSYNQISGRIPESIGRLSQLVFLDLMHNNLSGNLPFSIGDLSSLKFCSLSENKLTGLLPYSIGKLGNVRRVILENNKLTGNLPSTIGHLTSLTDLFLADNEFSGKIPPSFGNLINLQTLDLSRNQLSGLLPPQLAKLQSLQTLDLSFNPLGLAKVPKWVSKSRVFQLKLAQTGIKGQLPKWLAYSSVSTLDLSSNALTGKLPWWIGNMTRLSFLNLSNNQFHSSIPVAFMGLSSLMDLDLHSNNLTGSLKVVFEKEAQFSLGHFNSLDLSNNKFCGPIDDNIGQKASMSSIKSLALSHNPLGGSIPKSIGKLRELEILELEDSGLSGDIPEELGDAETLTKINLSNNKLSGNIPEKVLNLKKLEEFDVSRNRLRGRIPPHKAMFPISAFVGNRGLCGPPLPPCKLRYR 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03617 637 Pfam Leucine rich repeat 201 259 IPR001611 GO:0005515
Viun3g03617 637 Pfam Leucine rich repeat 320 379 IPR001611 GO:0005515
Viun3g03617 637 Pfam Leucine rich repeat 102 162 IPR001611 GO:0005515
Viun3g03617 637 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515
Viun3g03617 637 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Viun3g03617 637 Gene3D Ribonuclease Inhibitor 288 384 IPR032675 -
Viun3g03617 637 ProSiteProfiles Leucine-rich repeat profile. 344 367 IPR001611 GO:0005515
Viun3g03617 637 SMART LRR_sd22_2 125 151 - -
Viun3g03617 637 SMART LRR_sd22_2 366 383 - -
Viun3g03617 637 SMART LRR_sd22_2 318 344 - -
Viun3g03617 637 SMART LRR_sd22_2 589 617 - -
Viun3g03617 637 SMART LRR_sd22_2 222 248 - -
Viun3g03617 637 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 74 297 - -
Viun3g03617 637 SUPERFAMILY L domain-like 34 379 - -
Viun3g03617 637 Gene3D Ribonuclease Inhibitor 192 287 IPR032675 -
Viun3g03617 637 PRINTS Leucine-rich repeat signature 345 358 - -
Viun3g03617 637 PRINTS Leucine-rich repeat signature 366 379 - -
Viun3g03617 637 SMART LRR_typ_2 174 198 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 125 148 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 517 541 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 149 173 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 461 484 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 589 620 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 318 341 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 366 391 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 270 293 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 222 246 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 437 460 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 342 365 IPR003591 -
Viun3g03617 637 SMART LRR_typ_2 294 317 IPR003591 -
Viun3g03617 637 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 358 635 - -
Viun3g03617 637 PANTHER UNNAMED PRODUCT 5 110 - -
Viun3g03617 637 Gene3D Ribonuclease Inhibitor 23 191 IPR032675 -
Viun3g03617 637 SUPERFAMILY L domain-like 295 609 - -
Viun3g03617 637 Gene3D Ribonuclease Inhibitor 385 635 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03617 Viun-Chr3 42891913 42893950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03617 3 634 Receptor kinase-like Gene Family AT4G08850 33.138 2.25e-89 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03617 - - gmx:102664464 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03617 3 42891913 42893950 Viun3g03617 3 42891913 42893950 ECH