Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03548 ATGGGAACCACTTTAGCTGCAAAAACTCTCTCTGCTTTTCTATGGCTTTTCTTCTATGCCACACTCGTTTCTTCCAAATACATCAGGTACAATACCGGCGCTACTATTGTGCCAGGAAAATTGAACGTTCACCTGGTTCCACACTCCCATGATGATGTTGGTTGGCTCAAAACCGTTGATCAGTACTATGTTGGATCAAACAACAGTATCCAGGGGGCATGTGTTGAGAATGTGCTGGATTCGGTGGTTGTGTCTCTTCAGAAAGACCCAAATAGAAAGTTTGTGTTTGTCGAAATGGCCTTTTTCCATCGATGGTGGGTGGAACAAAGTCCAGAAACACAAGAAGAAGTGAGAAAGCTTGTGGATGCGGGGCAGTTAGAAATCATAAACGGTGGTTGGTGCATGCACGATGAAGCTGCAACGCATTACATAGACATGATTGATCAAACCACTTTGGGCCATCGATTTATCAAGGATGAGTTTAACAAGACTCCCACCGTTGGATGGCAGATTGATCCATTTGGACACTCTGCTGTGCAGGCTTACCTCCTTGGAGCTGAGCTTGGGTTTGATTCTGTACATTTTGCAAGAATTGATTATCAAGACAGGGCTAAGCGCAAAGCTGATAAGTCTCTTGAAGTTGTTTGGCGTGCCTCCAAAACATTTGGTTCTTCTGCTCAGATTTTTGCCAATGCTTTCCCTGTTCATTATAGTGCTCCAAATGGTTTCAACTTTGAAGTCAATAATGTTGATGTTAATGTTGTTCCAGTGCAGGATGATCCTCTTCTTTTTGACTACAACGTTGAACAACGTGTCCAAGACTTTATTGAAGCTGCTATTACCCAAGCAAATGTGACGAGGACAAACCATATAATGTGGACAATGGGTGATGATTTCCAGTACCAATATGCAGAGACTTGGTTCAAGCAAATGGATAAATTAATTCACTATGTTAATAAGGATGGTAGAGTAAACGCTTTGTATTCCACTCCATCTATTTACACCAATGCCAAAAATGCTGCTAATCAAACTTGGCCTCTGAAAACTGATGATTACTTCCCGTATGCTGATAGTGCTAATGCTTATTGGACTGGCTATTTCACCAGTCGCCCAGCCTTAAAGCGATATGTTAGATTGGCAAGTGGATACTATTTGGCTACGCGTCAACTTGAATTTTTTGCTGGAAAGCAATCAGCTAAATACAGTACTTTTGGTCTTGGAGATGCTCTAGGAATTGCACAACACCATGATGCTGTCAGTGGCACTGCCAAACAGCATACAACCAATGACTATGCCAAACGACTGGCTATTGGAGTCTCTGAGGCTGAAGCAGTTGTTAGTTCTTCCTTGGCTTGTATTACTAGTAAGAAATCAAATGGTCAATGTTCAGCACCTGCATCGGCTTTTGCCCAGTGTCAATTGTTAAATATCAGTTACTGCCCTCCTACAGAAGATAACATTCCAGACGCCAAGAGTTTGGTAGCTGTGGTGTATAATCCACTTGGATGGAAACGTACTGATATTGTCAAAATACCAGTTAATGATGCTAATCTTGTTGTCCAAGACTCACTGGGCAATAATATCGAAGTACAATATGTAGATGTGGATGATGTTACAACAAATTTAAGAAATTTCTATGTAAAGGCTTATTTGGGGGTGTCACCAAAACAAGCCCCAAAGTACTGGCTTCTGTTTCAGGCGTCAGTACCTCCACTTGGATGGAGCACGTACTTCATTTCTAAAGCAACGGGAACAGGGTCCAGAACAAAAAACCTATCTAACCTCGGCAGTCAGAGAGGTGACACCATTGTCATTGGGCCCGGAGATTTAAAGATGTCCTTTTCCTCAACCTCTGGACAACTCAAAAGGATGTATAATTCTAGAACTGGAGTTGATATACCTATTCAGCAAAGCTATCTCTATTATGGATCTAGTGAGGGTGATAGTGATCCTCAGGCGTCTGGTGCATATATATTCCGGCCTAATGGATCCCCTCCAACTATCATTTCAAGATCAGTGCCCACCAAGGTAATCCGCGGACCACTAGTTGATGAAGTTCATCAGAAATTCAGCTCTTGGATTTATCAGGTTACTAGGCTTTACAAAGACAAAGACCATGCTGAAGTCGAATTCACTATTGGTCCAATTCCTACTGATGATGGAGTTGGAAAAGAGGTGGTCACACGAATGACAGCAAATATGGCCACAAACAAGGAGTTTTATACTGATTCCAACGGCAGAGATTTTCTCAAACGAGTTCGAGATCATAGGGATGATTGGCCCCTTCAAGTAACTCAACCAGTTGCAGGAAACTATTACCCACTTAATCTTGGAATTTATACCAAGGATAAGAAATCTGAGTTCTCAGTCTTAGTTGATCGTGCCACTGGTGGGGCTAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCACAGGCGTATTCTTCACGATGATGGTCGAGGAGTTGGGGAAGCACTCGATGAACAAGTTTGCGTGAACAATAACAAAACATGTGAAGGACTAACAGTCAGAGGAAATTATTATATCAGCATAGACAAACTTGGAGCTGGTGCACGCTGGCGCCGTACAACTGGTCAAGAAATCTATTCGCCATTCTTATTGGCTTTTACACATGAGAACTCGGAAAGTTGGAAGTCCTCACATTGGACCAAAGGAACAATCATGGACCCAAATTACAGCTTGCCCCCGAATGTTGCTCTGATAACTCTTGAGGAGTTGGATGGTGGAGTTGTGCTTCTCCGTTTGGCACATCTCTATGAGGCAAGTGAAGATGCTGAGTATTCAACTCTAACCAAAGTAGAACTGAAGAAGCTGTTTGCCAAGAAAACGATAAAGGAGTTGAAAGAGGTAAGTTTATCAGCTAACCAAGAGAAGTCAGAAATAAAGAGAATGACATGGAAGGTTGAAGGAGACAATGGAGAAGAACCTCAAGGACTTAAGGGTGGCCCTGTCAGAAATCCTAATTTCGTTGTTGAGCTTGGCCCCATGGAAATACGAACTTTCCTATTGAAACTTTAA 3039 0.4235 MGTTLAAKTLSAFLWLFFYATLVSSKYIRYNTGATIVPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSVVVSLQKDPNRKFVFVEMAFFHRWWVEQSPETQEEVRKLVDAGQLEIINGGWCMHDEAATHYIDMIDQTTLGHRFIKDEFNKTPTVGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRAKRKADKSLEVVWRASKTFGSSAQIFANAFPVHYSAPNGFNFEVNNVDVNVVPVQDDPLLFDYNVEQRVQDFIEAAITQANVTRTNHIMWTMGDDFQYQYAETWFKQMDKLIHYVNKDGRVNALYSTPSIYTNAKNAANQTWPLKTDDYFPYADSANAYWTGYFTSRPALKRYVRLASGYYLATRQLEFFAGKQSAKYSTFGLGDALGIAQHHDAVSGTAKQHTTNDYAKRLAIGVSEAEAVVSSSLACITSKKSNGQCSAPASAFAQCQLLNISYCPPTEDNIPDAKSLVAVVYNPLGWKRTDIVKIPVNDANLVVQDSLGNNIEVQYVDVDDVTTNLRNFYVKAYLGVSPKQAPKYWLLFQASVPPLGWSTYFISKATGTGSRTKNLSNLGSQRGDTIVIGPGDLKMSFSSTSGQLKRMYNSRTGVDIPIQQSYLYYGSSEGDSDPQASGAYIFRPNGSPPTIISRSVPTKVIRGPLVDEVHQKFSSWIYQVTRLYKDKDHAEVEFTIGPIPTDDGVGKEVVTRMTANMATNKEFYTDSNGRDFLKRVRDHRDDWPLQVTQPVAGNYYPLNLGIYTKDKKSEFSVLVDRATGGASIKDGEVELMLHRRILHDDGRGVGEALDEQVCVNNNKTCEGLTVRGNYYISIDKLGAGARWRRTTGQEIYSPFLLAFTHENSESWKSSHWTKGTIMDPNYSLPPNVALITLEELDGGVVLLRLAHLYEASEDAEYSTLTKVELKKLFAKKTIKELKEVSLSANQEKSEIKRMTWKVEGDNGEEPQGLKGGPVRNPNFVVELGPMEIRTFLLKL 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03548 1012 SUPERFAMILY Families 57/38 glycoside transferase middle domain 361 461 IPR028995 -
Viun3g03548 1012 SMART Alpha_mann_mid_2 361 435 IPR015341 GO:0004559|GO:0006013
Viun3g03548 1012 FunFam Alpha-mannosidase 323 403 - -
Viun3g03548 1012 PANTHER ALPHA-MANNOSIDASE 14 1012 - -
Viun3g03548 1012 FunFam Alpha-mannosidase 471 582 - -
Viun3g03548 1012 Pfam Glycosyl hydrolases family 38 N-terminal domain 42 356 IPR000602 GO:0004559|GO:0006013
Viun3g03548 1012 Pfam Alpha mannosidase middle domain 361 452 IPR015341 GO:0004559|GO:0006013
Viun3g03548 1012 Gene3D - 894 1012 - -
Viun3g03548 1012 Gene3D - 602 870 - -
Viun3g03548 1012 FunFam Alpha-mannosidase 604 870 - -
Viun3g03548 1012 Pfam Glycosyl hydrolases family 38 C-terminal domain 608 820 IPR011682 GO:0004559|GO:0006013
Viun3g03548 1012 FunFam Alpha-mannosidase 41 324 - -
Viun3g03548 1012 Gene3D Glycoside hydrolase family 38, central domain 325 404 IPR037094 GO:0004559|GO:0006013
Viun3g03548 1012 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 904 1009 IPR041147 -
Viun3g03548 1012 Gene3D Glycoside hydrolase 38, N terminal domain 41 324 IPR027291 -
Viun3g03548 1012 FunFam Alpha-mannosidase 404 459 - -
Viun3g03548 1012 Gene3D Glycoside hydrolase family 38, central domain 405 459 IPR037094 GO:0004559|GO:0006013
Viun3g03548 1012 FunFam Alpha-mannosidase 890 1012 - -
Viun3g03548 1012 CDD GH38N_AMII_LAM_like 41 320 - -
Viun3g03548 1012 SUPERFAMILY Glycoside hydrolase/deacetylase 30 357 IPR011330 GO:0005975
Viun3g03548 1012 SUPERFAMILY Galactose mutarotase-like 469 1011 IPR011013 GO:0003824|GO:0005975|GO:0030246
Viun3g03548 1012 Gene3D - 471 582 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03548 Viun-Chr3 42301434 42310860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03548 5 959 Glycoside Hydrolase AT3G26720 60.625 0.0 1220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03548 K01191 - gmx:100775419 1840.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03548 3 42301434 42310860 Viun3g03548 3 42301434 42310860 ECH