Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03543 ATGCAAGACATGTGGAATGTTCCTCCGGGTTTCAGACCCTCCAAATCTGCACCTTCTTCTCCTGCGAAGCCTCTCGGAGCAGTTCTCAGAACGCGCTCTGAGTCCTTCCATATCACTCATAAGGTCCCAGTTGGCGACACTCCTTATGTCAGAGCAAAAAATGTTCAGTTGGTGGATAAGGATCCGGAGAAAGCAATTCCGCTGTTTTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGATATGGCTATTGTCATGAAGCAGCAAAATCGGGCTGGAGAAGCCATTGAAGCCATTAAATCTCTTCGAAGTAGATGTTCCGATCAAGCCCAAGAATCTCTTGATAACATCCTCTTGGATCTTTACAAGAGATGTGGAAGACTTGATGACCAAATAGCCCTCTTGAAGCACAAGTTGTACTTAATTCAACAAGGGTTGGCATTCAATGGTAAGCGCACAAAGACAGCAAGATCTCAAGGGAAGAAGTTTCAAGTTTCTGTGGAACAAGAAGCCACGAGATTGCTGGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCTTATCGCCGGGCGCTATCTATTGCTCCTGACAACAATAAGATGTGCAATCTGGGCATTTGTTTGATGAAGCAAGGAAGAATTGGTGAGGCAAAAGAGACACTGTACCGTGTAAAGCCTGCAGTTATGGATGGCCCTAGAGGCTCAGATTCTCACTTGAAAGCCTATGAAAGGGCACAGCAGATGCTGAAAGACCTTGAATCTGAGATGATGAATAAGGGAGTTGATAGGATTGAACAAAGCAGGCTCTTTGAGGCCTTTTTAGGTTCTTCATCAATATGGCAACCCCAGCCTTGCAAGGACCACCACACAACCTTGCCAGCAGCAACAAATTCAGCCAGAATTCAAGATGATTTTGCTGATGAGAACATCAACTCCAACATAATCACCAAAAATCACACAGCACTGCCACCCCCTAAAGCTACCACTACTAGTTCTACCAACAAACAAAGTGTTACCATGTTGGGGAACTCACTGAATGTTGCAGCTCCACCCTTCTATGCATCAAAATCCATGCTGAGAGAACCATTTGAGAACCAATTCTCTGAGACCCTTAAGAGAACAAGGTCTGGAAAAGCTGCAGGATCCATGAGAATAGTTAGTGATGTGAAGGACAGCAGCAGCAGCAACAGCAGCAACAAGTTGCAAGTGGAATTAGAGGTGTCAGTGCCAGAGAACAAAACAAGAAGGCTGTCATCAGAGGATGGTGAGAAGAACAAGTTAACAGATCTGTTACCTGATGATGATGACTTTGAAGAGGCCATTCTTGCTGCAATTTTGGGACCCTCCAATGATAATAAAGCTACTACTGAGACAAGCAGAATTTTGCAGAGGAATAACAATGACAAGAGGCTTAAGGTTTTTAAGGATATCACGCTATCTCTGAGTCCTAGAGCCTGA 1491 0.448 MQDMWNVPPGFRPSKSAPSSPAKPLGAVLRTRSESFHITHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAGEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGSDSHLKAYERAQQMLKDLESEMMNKGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHTTLPAATNSARIQDDFADENINSNIITKNHTALPPPKATTTSSTNKQSVTMLGNSLNVAAPPFYASKSMLREPFENQFSETLKRTRSGKAAGSMRIVSDVKDSSSSNSSNKLQVELEVSVPENKTRRLSSEDGEKNKLTDLLPDDDDFEEAILAAILGPSNDNKATTETSRILQRNNNDKRLKVFKDITLSLSPRA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03543 496 ProSiteProfiles TPR repeat region circular profile. 176 209 - -
Viun3g03543 496 Gene3D Tetratricopeptide repeat domain 54 237 IPR011990 GO:0005515
Viun3g03543 496 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
Viun3g03543 496 Coils Coil 246 273 - -
Viun3g03543 496 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Viun3g03543 496 MobiDBLite consensus disorder prediction 382 412 - -
Viun3g03543 496 SMART tpr_5 176 209 IPR019734 GO:0005515
Viun3g03543 496 MobiDBLite consensus disorder prediction 1 25 - -
Viun3g03543 496 MobiDBLite consensus disorder prediction 398 412 - -
Viun3g03543 496 PANTHER PROTEIN POLLENLESS 3-LIKE 2 13 490 IPR044961 -
Viun3g03543 496 SUPERFAMILY TPR-like 57 283 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03543 Viun-Chr3 42265592 42267946 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03543 - - gmx:100788369 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03543 3 42265592 42267946 Viun3g03543 3 42265592 42267946 ECH