Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03542 ATGTCAAAGAGAAACTGCGTCGTTATTCTGTCATCGGAAGATGAAGACGCTACTTCTAAGTTGAGTTCGAGTAGCAACTATAAAAAGACGAAGTCGAGGTCCACCTCAGCATCCTCTCGGGGAAGGAAGAAGGCACGTGCTTCACATTCTCGCTCTCACCTCTCCAAACTGCACGAGATAGACTTATTTGGAGATGACTTCAATGAGGTGTTTACTGGGTCAAAGGTATCCGCTGGTACTCAAAGGAGCTCTGCAGAGGAGTTATGGGTTGATAAATACAAGCCCAATTCATTAGAAGAGCTTGCTGTTCACAAGAAAAAGGTTGAAGATGTTAAGACATGGTTTGAAGAGAGGTTGAAATCTTCGAAGGGTGTTTACAATAATAATGTTCTCCTCATCAGTGGTCAGGCTGGAGTTGGAAAATCTGCTGCTATTCATGTAATTGCATCTCATCTGGGAGCAATAGTTTATGGGTGGAACACACCTACACCTGTAATATGGCAGGAGCATCTTTATAATTCTGGCACAGGGACTCAATACACATCCAAGCTAGATGAATTTGAAAGTTTCGTTGAGAGAGTACGAAAATATGGATTATTGCTAACTTCTTATACTGGGGATTCAAAGCCTTCCATCATACTTTTAATAGACGATCTTCCCATGACTAATGGCAAATCTGCTTTTGGAAGACTTAAAAATTGCTTGCAACTTTTGGTAAAATCAACTCAGATACCCACAGCAATATTGTTAACTGACTGTGGAAATGCTGACTCAGTAGATTATAATGCTCGTTGCCTGGAAGAACTGAAGCTATCACTAGAGAGTTCTGGGGCTTGTAAGGTTGCTTTCAATCCAATTACAGTGAATTCTATGAAGAAGGTTCTTTTAAGAATATGCCAAATGGAGCGGTGTGATGTGACTGCTGAGTATGTTGATCTAATAGCAAAAACAAGTGGAGGTGACATCAGACATGCAATCACTTCTTTACAGTTTTTCTGCCTGAAACCAAATCTAGTGCACTCTTTGGCCTCTTCTACTTCCTCTCATGTTTCGTTGAAAGAGGAAAGTAATAAACCTGATACATCAGATTCTGGATACTCGTTGCACTTTGGCAGAGACGAAGCATTATCTCTATTTCATGCTTTGGGGAAATTTTTGCATAATAAAAGGGAGACTGGAGTTGGAATAGAATATGATCAAGATGGATTTCTTATTCGAGAAAGACTTTCAAGATTACCATTAAAAATGGATGTCCCTGAGAAGATTCTTTGCCAAGCCCATGTGCAACCTGGTTCAGTTGCTGATTTTCTGCATGAAAATGTTCTGGATTTTTTGGATGATGAGGCGATACATGACGCATGGACTGTGTCTTCATATCTAGGTGATGCTGACATTCTTCTTGCAAAACTCCGGGGAATGGTATGTAGTTATAACGAGGCAGAGGGTGTTTTACAGTCAGCTGCTGCATCGATAGCTGTTCGTGGGGTTCTATTTGGAAATTCTAATCCACTATCCTCCAGGTGGCATGCTGTTCGACGACCAAGGCTCTGGCAAGTTGAGAAAGTATCATTTTACAAGAATGAGGTGGATAGGCTCAGAATCCCTGCCTGTAAACGGTTTAGTTCTTATCATATGTCAATTATGGCCACTGAGTACATGCCCATGCTTAAATTGCTCGGAAATAGAGCATGTGGATATGATGGACCGAGTCAGAAATCATCACCGAACTTGGAAATGGAAGACTTTGATTTCGATAAAATGGATTTAGATGAACAATCTATGGGCCTTTCCGATGATGACATAGAAGATTGGTAG 1815 0.4088 MSKRNCVVILSSEDEDATSKLSSSSNYKKTKSRSTSASSRGRKKARASHSRSHLSKLHEIDLFGDDFNEVFTGSKVSAGTQRSSAEELWVDKYKPNSLEELAVHKKKVEDVKTWFEERLKSSKGVYNNNVLLISGQAGVGKSAAIHVIASHLGAIVYGWNTPTPVIWQEHLYNSGTGTQYTSKLDEFESFVERVRKYGLLLTSYTGDSKPSIILLIDDLPMTNGKSAFGRLKNCLQLLVKSTQIPTAILLTDCGNADSVDYNARCLEELKLSLESSGACKVAFNPITVNSMKKVLLRICQMERCDVTAEYVDLIAKTSGGDIRHAITSLQFFCLKPNLVHSLASSTSSHVSLKEESNKPDTSDSGYSLHFGRDEALSLFHALGKFLHNKRETGVGIEYDQDGFLIRERLSRLPLKMDVPEKILCQAHVQPGSVADFLHENVLDFLDDEAIHDAWTVSSYLGDADILLAKLRGMVCSYNEAEGVLQSAAASIAVRGVLFGNSNPLSSRWHAVRRPRLWQVEKVSFYKNEVDRLRIPACKRFSSYHMSIMATEYMPMLKLLGNRACGYDGPSQKSSPNLEMEDFDFDKMDLDEQSMGLSDDDIEDW 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03542 604 Gene3D - 289 354 - -
Viun3g03542 604 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 71 601 IPR004582 GO:0006281
Viun3g03542 604 MobiDBLite consensus disorder prediction 15 34 - -
Viun3g03542 604 MobiDBLite consensus disorder prediction 35 51 - -
Viun3g03542 604 CDD HLD_clamp_RFC 286 331 - -
Viun3g03542 604 Pfam Rad17 P-loop domain 84 259 - -
Viun3g03542 604 MobiDBLite consensus disorder prediction 12 53 - -
Viun3g03542 604 FunFam RAD17 checkpoint clamp loader component 86 267 - -
Viun3g03542 604 Gene3D - 86 267 IPR027417 -
Viun3g03542 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 335 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03542 K06662 - gmx:100799826 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03542 3 42253710 42258696 Viun3g03542 3 42253710 42258696 ECH