Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03540 ATGAGCGCTACTAGGTTCATCAAGTGTGTCACTGTTGGAGATGGAGCTGTGGGCAAAACTTGCTTGTTAATCTCCTATACCAGCAATACCTTTCCCACTGATTATGTGCCAACAGTTTTTGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTGGGACTGTGGGACACTGCTGGACAAGAGGATTACAACAGATTACGACCATTGAGTTATCGAGGTGCCGATGTTTTCATCTTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTTTCCAAGAAGTGGATTCCAGAGTTAAAACATTATGCACCTGGTGTTCCCATTATTCTGGTTGGCACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTCGTAGACCATCCCGGTGCTGTACCCATTACCACAGTTCAGGGAGAAGAACTTAAGAAGCTGATTAACTCACCTGCTTACATTGAGTGCAGTTCAAAATCACAAGAGAACGTGAAAGCAGTGTTTGATGCAGCCATAAGAGTTGTCCTTCAGCCACCAAAACAAAAGAAAAAGAAGAATAAAGGACAAAGAGCGTGTTCAATATTGTGA 594 0.4242 MSATRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTVQGEELKKLINSPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKNKGQRACSIL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03540 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Viun3g03540 197 Gene3D - 4 191 IPR027417 -
Viun3g03540 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Viun3g03540 197 NCBIfam small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Viun3g03540 197 SMART ras_sub_4 4 180 - -
Viun3g03540 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Viun3g03540 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Viun3g03540 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Viun3g03540 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Viun3g03540 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Viun3g03540 197 FunFam rac-like GTP-binding protein RHO1 5 192 - -
Viun3g03540 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Viun3g03540 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Viun3g03540 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Viun3g03540 197 PANTHER RHO FAMILY GTPASE 5 195 IPR003578 GO:0005525|GO:0007264
Viun3g03540 197 CDD Rop_like 6 178 - -
Viun3g03540 197 SMART rab_sub_5 7 180 - -
Viun3g03540 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03540 Viun-Chr3 42242897 42245134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03540 7 180 EF-hand Containing Proteins AT5G27540 26.437 4.18e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03540 K04392 - ath:AT4G35950 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03540 3 42242897 42245134 Viun3g03540 3 42242897 42245134 ECH