Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03258 ATGGCTATAGGAGCAGTTGCAAATTCCACTCTTCTCCTATCTTCTAAACCCAATCACTTCTCCTTCTCCCTCACCAAAACGTCGCCGTTTCTTTCTCTTCTCTCTCCTCGCCTACGCCGCTTCCTTTCTGTTTCTTCTCTAACCGCCGACCACCACAACCTCTCTGATTTCGGAGATGGTGATGGCGTTGGAATTTCAAGTCAAGGTTCGAAGACCCTTCTCAAAGGGATGACTTACCCTGATCTTGAAAAATGGGTTTACTCACATGGATACAGGCCTGGGCAGGCCATGATGTTATGGAAGCGAATGTATGGAAACAACATTTGGGCCCAACATGTTGATGAGTTGGAAGGATTGAATAAAGATTTCAAGAAAATGTTGAATGAAAATGCCGCGTTCAAGGCACTTGCTCTGAAAGAAATTCACACAGCATCTGATGGAACAAGAAAGATTTTATTCACATTGGATGATGGGCTGGTCATAGAAACAGTTGTCATACCTTGTGACCGAGGTAGGACTACTGTATGTGTTTCAAGTCAAGTTGGGTGTGCCATGAATTGTCAGTTTTGCTATACTGGAAGAATGGGTCTTAGGAGACATCTTACTGCTGCAGAAATAGCAGAGCAGGCTGTTTCTGCCAGACGCTTGCTCACAGATGAAGTTGGCTCCATCACAAATGTTGTCTTTATGGGCATGGGGGAACCATTTCATAACATCGATAATGTCATTAAAGCTGCAAATATAATGGTGGATGAGCAAGGGCTTCAGTTCAGTCCTCGCAAAGTCACTGTCTCAACCAGTGGGCTTGTTCCACAGCTCAAACGTTTCCTCCATGAATCTAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACCGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTTCAGACACTTCGAGAGGAGCTTCGTCTCAAAAAGAACTACAAAGTCCTGTTTGAGTATGTGATGCTTGAAGGAATTAATGACAGTGATGGAGATGCAGAGAGGCTTATCGAGCTTGTGAAGGGCATTCCTTGCAAGATTAACCTAATCTCATTCAATCCTCACAGTGGATCATTGTTCAGACCAACCAAAGAGGAAAGGATGATTGAATTCCGTAACACAATTGCTAGGGCAGGATTGACAGTCTTTTTAAGACTTAGTAGAGGTGATGATCAAATGGCTGCTTGCGGTCAACTGGGTAAGCCTGGCACCATTCAAGCTCCACTGCTTCGTGTTCCACAGCAATTTCAAATGGCAATTGGAGGTTCATCTTGA 1308 0.4373 MAIGAVANSTLLLSSKPNHFSFSLTKTSPFLSLLSPRLRRFLSVSSLTADHHNLSDFGDGDGVGISSQGSKTLLKGMTYPDLEKWVYSHGYRPGQAMMLWKRMYGNNIWAQHVDELEGLNKDFKKMLNENAAFKALALKEIHTASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIAEQAVSARRLLTDEVGSITNVVFMGMGEPFHNIDNVIKAANIMVDEQGLQFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLDLLLQTLREELRLKKNYKVLFEYVMLEGINDSDGDAERLIELVKGIPCKINLISFNPHSGSLFRPTKEERMIEFRNTIARAGLTVFLRLSRGDDQMAACGQLGKPGTIQAPLLRVPQQFQMAIGGSS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03258 435 SFLD adenosine C2 methyltransferase (RlmN-like) 69 412 IPR004383 GO:0006364|GO:0008173
Viun3g03258 435 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 71 411 IPR027492 GO:0030488|GO:0070475
Viun3g03258 435 Pfam Radical SAM superfamily 178 341 IPR007197 GO:0003824|GO:0051536
Viun3g03258 435 ProSiteProfiles Radical SAM core domain profile. 169 402 IPR007197 GO:0003824|GO:0051536
Viun3g03258 435 FunFam Radical SAM superfamily protein 71 134 - -
Viun3g03258 435 SUPERFAMILY Radical SAM enzymes 171 391 - -
Viun3g03258 435 Gene3D - 71 133 - -
Viun3g03258 435 Pfam 4Fe-4S single cluster domain 182 285 - -
Viun3g03258 435 Gene3D Aldolase class I 136 416 IPR013785 -
Viun3g03258 435 SFLD Radical SAM 69 412 IPR007197 GO:0003824|GO:0051536
Viun3g03258 435 FunFam Dual-specificity RNA methyltransferase RlmN 136 415 - -
Viun3g03258 435 CDD Radical_SAM 182 382 - -
Viun3g03258 435 PANTHER 23S RRNA METHYLTRANSFERASE 51 417 IPR040072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03258 Viun-Chr3 39466929 39477349 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03258 K06941 K22544 gmx:100813692 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03258 3 39466929 39477349 Viun3g03258 3 39466929 39477349 ECH