Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03236 ATGAGTCCTTTGAGTTTCAGAGGTTTCACATACCTGTTTCTCATTGTATTTCTCATTTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCACTGGAGGCATAGCACCAGGGATGATGCATCACCTGCTTTGTATAAGAAAAAAGCAAAAAGTTATGGAAATGGTCACAACAAAAACCATGGTGGAGGATCAAAACCAAAGCCTCCATCATCACATAAAGCCACCCCAACATTACCAAAGCCTCCACCTCATAAAACCATTCCCTCACCACCATATCCACCACCATCAAATGAAGATACCCCCACAACTCCCCCACCAAAACCTTACAACGGAGGCCATTCTTCCTCCACCACCTTCAATGTGCTAGATTTTGGTGCCAAGGGAGATGGAAAAACTGATGACACAAAGGCATTTCAAGCGGCTTGGGCTGAAGCTTGCAAAGTAGAGGCATCAACCATGGTGATTCCACCAGACTACGTCTTCTTTGTGGGGCCCATTTCATTCTCGGGCCCATACTGTAAACCCAACATCGTTTTCCAGCTTGATGGCACCATTGTTGCACCAACAAACCCCAATGCCTGGGGCAGAGGACTACTACAGTGGTTAGAATTTACCAAGTTGGTGGGAATTACCATTCAAGGAAATGGTGTTATTGATGGAAAGGGCTCTGTGTGGTGGCAAGATCATCAATATGATGATCCCATAGATGATGAAGAAAAGCTCATAGTCCCTTTAAACCAGACAGTACCAAGTCCACCACTGCCGATTCAAAGTGAGCTGGGAGGAAAAATGCCATCTGTCAAGCCAACTGCACTACGCTTCTATGGGAGTTTTAACCCAACAGTTACAGGCATAACAATTCTAAATAGCCCACAATGCCACCTCAAGTTTGACAACTGCAATGGGGTTCTGGTCCACAATGTGAGCATATCATCCCCTGGGAACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTACTGATATATGGCAGCACTATGGCATGCGGAGATGACTGTATTTCCATACAAACTGGATGCTCGAATGTTTATGTTCACAATGTCAACTGTGGACCAGGGCATGGAATCAGCATTGGAAGTCTAGGAAAGGATAACACCAGAGCCTGTGTTTCAAACATTACTGTCAGAGATGTCAACATGCACAACACAATGACTGGTGTCAGAATCAAAACATGGCAGGGTGGGTCGGGCTCTGTACAAGGAATACTATTCTCAAATATACAAGTTTCTGAAGTTCAATTCCCAATTGTGATCGATCAATTCTACTGCGATAAAAGAAACTGCAAAAACCAAACATCGGCTGTTTCTCTGGCTGGAATCAACTATGAAAGGATAAAGGGGACATACACAGTTATGCCAGTGCACTTTGCCTGCAGTGATAGCCTTCCTTGTGTAGATGTTTCTTTAACCTCTGTTGAGTTGACACCAATTCAAGAACAAAACCATCTATATGATCCCTTCTGCTGGCAGACTTATGGTGAATTGAAAACTCCAACACTCCCACCAATTGGTTGTCTACAGATTGGGAAGCCCACAAACAATCGGATTCAGACAGATCACGATTTATGTTGA 1611 0.4401 MSPLSFRGFTYLFLIVFLIWSSNFEACIARRGKHWRHSTRDDASPALYKKKAKSYGNGHNKNHGGGSKPKPPSSHKATPTLPKPPPHKTIPSPPYPPPSNEDTPTTPPPKPYNGGHSSSTTFNVLDFGAKGDGKTDDTKAFQAAWAEACKVEASTMVIPPDYVFFVGPISFSGPYCKPNIVFQLDGTIVAPTNPNAWGRGLLQWLEFTKLVGITIQGNGVIDGKGSVWWQDHQYDDPIDDEEKLIVPLNQTVPSPPLPIQSELGGKMPSVKPTALRFYGSFNPTVTGITILNSPQCHLKFDNCNGVLVHNVSISSPGNSPNTDGIHLQNSKDVLIYGSTMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMTGVRIKTWQGGSGSVQGILFSNIQVSEVQFPIVIDQFYCDKRNCKNQTSAVSLAGINYERIKGTYTVMPVHFACSDSLPCVDVSLTSVELTPIQEQNHLYDPFCWQTYGELKTPTLPPIGCLQIGKPTNNRIQTDHDLC 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03236 536 MobiDBLite consensus disorder prediction 52 118 - -
Viun3g03236 536 ProSitePatterns Polygalacturonase active site. 360 373 IPR000743 GO:0004650|GO:0005975
Viun3g03236 536 Gene3D - 113 521 IPR012334 -
Viun3g03236 536 Pfam Pectate lyase superfamily protein 122 147 IPR024535 -
Viun3g03236 536 SUPERFAMILY Pectin lyase-like 119 535 IPR011050 -
Viun3g03236 536 MobiDBLite consensus disorder prediction 75 111 - -
Viun3g03236 536 SMART pbh1 383 404 IPR006626 -
Viun3g03236 536 SMART pbh1 303 329 IPR006626 -
Viun3g03236 536 SMART pbh1 412 433 IPR006626 -
Viun3g03236 536 SMART pbh1 210 231 IPR006626 -
Viun3g03236 536 SMART pbh1 353 373 IPR006626 -
Viun3g03236 536 SMART pbh1 330 351 IPR006626 -
Viun3g03236 536 PANTHER - 120 506 - -
Viun3g03236 536 Pfam Glycosyl hydrolases family 28 270 489 IPR000743 GO:0004650|GO:0005975
Viun3g03236 536 Pfam Glycosyl hydrolases family 28 152 232 IPR000743 GO:0004650|GO:0005975
Viun3g03236 536 FunFam polygalacturonase At1g48100 110 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03236 Viun-Chr3 39182089 39187159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03236 4 536 Glycoside Hydrolase AT1G60590 64.014 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03236 - - gmx:732602 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03236 3 39182089 39187159 Viun3g03236 3 39182089 39187159 ECH