Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03231 ATGGTCGTAGTTGCATTATCCTCCTCTCTTCCCGTCGGGAGAAACCTCTTCTCTTCCTTACCATCAACGCCGCCACCCGCCGATCGCACTCCTGCGGTCTCCGCCACTCCGCCGCCGCCAATCCCCGTCCCCAAGTATCCCCCGCCCCGCAAATCCCAAAACCCTCCTCCTCAATCCCCGACCCCGAATCCCGGCCTCAGATACCACCGCCACTCCAAGTATCACAAACGCGTGCCACATGATGGTGTACTCGCCTCCGACAACGCGGACCGGTCCGTCATTATTGGTGAGTCCGGCGTGTCATACCTGCTCCCCGGTGCGCCGTTCGAGTTCCAGTTTAGCTACTCGGAGACGCCGAAGGCAAAGCCGATCGCGATTCGAGAGCCGGCGTTTCTTCCGTTCGCGCCGCCTACTATGCCCCGGCCCTGGACGGGGAAGGCGCCGCTGAAGAGCAAAAAGAAGAAGATTCCGTTGTTCGACTCGTTCAATCCTCCACCGCCTGGCACGAAGGGCGTGAAGCACGTGGAAATGCCGGGGCCGTTTCCCTTGGGGCAGTTCCCGAAGGAGGGTAAGACGAGGGAAGAGATTCTCGGGGAGCCTCTGAAGAGGTGGGAGATACAAATGCTTGTTAAGCCGATGATGTCGGATAATCGCCAGGTTAATCTTGGAAGGGATGGATTAACGCATAACATGCTGGAATTGGTACATTCACATTGGAAGCGTAGCCGTGTCTGTAAAGTTCGTTGTTTAGGTGTTCCAACTGTTGATATGGATAATGTATGTCATCATATTGAGGAGAAAACAGGGGGGAAAATAATTCATCGAACTGGTGGTGTAGTGTACCTTTTCCGTGGCAGAAATTACAACTATAGAACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCAGCTGCTCCTGTTTACCCAAAACTTATAGAAGATGCCCCAGGAGGACTAACAAAAGCTGAAGCTGATGAATTACGGATGAAGGGAAAAAGCCTTTTGCCAATTTGTAAATTAGCAAAAAATGGAGTGTATACATCCCTTGTAAAGGATGTCAGAGATGCTTTTGAAGGAAGTATTTTGGTGAAAGTTAACTGCAAGGGATTGGACCCTAGTGATTACAAGAAAATTGGTGCCAAACTCAAGGATTTGGTACCTTGTGTGCTGTTGTCTTTTGATGATGAACAGATATTGATGTGGAGGGGCAAAGATTGGAAATCAAGGTACCTGCAACCTGTTCCAGTTTTTACACCTTCAAAAGCTGGTTTTACAGGGAATTCAGAAAATTCAGGTGAGACTGATGACAACCAAACTAATCATGTTGACAACAATGTGGTGAACACAAGCCCAAAAATGTTGTCTCTGTGGAAACGTGCAATTGAGTCAAGCAAAGCTTTGTTGCTGGATGAATTTAATCTTGGTCCTGATTGTCTGTTGGAGAAGGTAGAGGAATTTGAGATTGCTTCACAGGCGTTGGATCACTCCCATCCAGCATTTAGTTTGTCATTTAGAGAAAATGACCAAGAAGCTTCAACTGCAAACTTTGAAAATAGTTATTCTAGTGACGAATTTCCTGCTGAAGAGGAGGATGAAGAAGACTATGATGACTACCATGATGAAGAAGACGATAACTCGTATGTAGTGGACACGTCAGCTGAACCCGAATCATTAGGCATTGATATGATTGTCAAAAAGCTAAAACAAAGACCATTTGAGTAA 1722 0.4768 MVVVALSSSLPVGRNLFSSLPSTPPPADRTPAVSATPPPPIPVPKYPPPRKSQNPPPQSPTPNPGLRYHRHSKYHKRVPHDGVLASDNADRSVIIGESGVSYLLPGAPFEFQFSYSETPKAKPIAIREPAFLPFAPPTMPRPWTGKAPLKSKKKKIPLFDSFNPPPPGTKGVKHVEMPGPFPLGQFPKEGKTREEILGEPLKRWEIQMLVKPMMSDNRQVNLGRDGLTHNMLELVHSHWKRSRVCKVRCLGVPTVDMDNVCHHIEEKTGGKIIHRTGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIEDAPGGLTKAEADELRMKGKSLLPICKLAKNGVYTSLVKDVRDAFEGSILVKVNCKGLDPSDYKKIGAKLKDLVPCVLLSFDDEQILMWRGKDWKSRYLQPVPVFTPSKAGFTGNSENSGETDDNQTNHVDNNVVNTSPKMLSLWKRAIESSKALLLDEFNLGPDCLLEKVEEFEIASQALDHSHPAFSLSFRENDQEASTANFENSYSSDEFPAEEEDEEDYDDYHDEEDDNSYVVDTSAEPESLGIDMIVKKLKQRPFE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03231 573 FunFam CRS2-associated factor 1, chloroplastic 318 413 - -
Viun3g03231 573 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 50 562 IPR044599 GO:0000373
Viun3g03231 573 MobiDBLite consensus disorder prediction 421 443 - -
Viun3g03231 573 MobiDBLite consensus disorder prediction 523 549 - -
Viun3g03231 573 FunFam CRS2-associated factor 1, chloroplastic 200 295 - -
Viun3g03231 573 SUPERFAMILY YhbY-like 319 411 IPR035920 -
Viun3g03231 573 ProSiteProfiles CRM domain profile. 317 413 IPR001890 GO:0003723
Viun3g03231 573 ProSiteProfiles CRM domain profile. 199 295 IPR001890 GO:0003723
Viun3g03231 573 MobiDBLite consensus disorder prediction 24 63 - -
Viun3g03231 573 SUPERFAMILY YhbY-like 200 294 IPR035920 -
Viun3g03231 573 Gene3D - 200 296 IPR035920 -
Viun3g03231 573 Gene3D - 319 414 IPR035920 -
Viun3g03231 573 SMART CRS1_YhbY_2 201 284 IPR001890 GO:0003723
Viun3g03231 573 SMART CRS1_YhbY_2 319 402 IPR001890 GO:0003723
Viun3g03231 573 Pfam CRS1 / YhbY (CRM) domain 319 402 IPR001890 GO:0003723
Viun3g03231 573 Pfam CRS1 / YhbY (CRM) domain 205 284 IPR001890 GO:0003723
Viun3g03231 573 MobiDBLite consensus disorder prediction 513 554 - -
Viun3g03231 573 MobiDBLite consensus disorder prediction 13 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03231 Viun-Chr3 39076955 39085613 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03231 - - gmx:100801953 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03231 3 39076955 39085613 Viun3g03231 3 39076955 39085613 ECH