Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03042 ATGTCAGTGCAGGAAACTGACCAAATCAAACAACTCGGCGAAATATTCAAACGCTTCGACATGGACTCTGACGGCAGCCTCACGCACCTGGAGCTGGCGGCGCTCCTCCGTTCCCTCGGAGTCAAACCCACCGGCGACGAGCTCTACGCGCTGCTCTCCAACATGGACGAAAACGGCAACGGATACATCGAGTTCGACGAGCTCCTGCACGCGATCATGCCCGACCTCAACGAGCAGGTTCTCATGAACCAGGAGCAGCTACTCGATGTCTTCCGCTCCTTCGACCGCGACGGCAACGGCTACATCACGGCGTCGGAGCTCGCCGGCTCCATGTCCAAGATGGGCCATCCCCTCACCTACCACGAGCTCACCTCTATGATGACCGAGGCCGACAGCAACGGCGACGGTGTCATTAGCTTCAACGAGTTCGCCGCCCTCATGGCTAAATCCGCCGCCAAATTTCTCGGCCTCCATGGCGCCTAG 483 0.5921 MSVQETDQIKQLGEIFKRFDMDSDGSLTHLELAALLRSLGVKPTGDELYALLSNMDENGNGYIEFDELLHAIMPDLNEQVLMNQEQLLDVFRSFDRDGNGYITASELAGSMSKMGHPLTYHELTSMMTEADSNGDGVISFNEFAALMAKSAAKFLGLHGA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03042 160 PANTHER CALCIUM BINDING PROTEIN 83 147 - -
Viun3g03042 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Viun3g03042 160 SMART efh_1 122 150 IPR002048 GO:0005509
Viun3g03042 160 SMART efh_1 86 114 IPR002048 GO:0005509
Viun3g03042 160 SMART efh_1 47 75 IPR002048 GO:0005509
Viun3g03042 160 SMART efh_1 11 39 IPR002048 GO:0005509
Viun3g03042 160 CDD EFh 11 73 IPR002048 GO:0005509
Viun3g03042 160 FunFam Probable calcium-binding protein CML16 1 153 - -
Viun3g03042 160 Pfam EF-hand domain pair 10 72 IPR002048 GO:0005509
Viun3g03042 160 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Viun3g03042 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Viun3g03042 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Viun3g03042 160 Gene3D - 5 155 - -
Viun3g03042 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Viun3g03042 160 CDD EFh 86 148 IPR002048 GO:0005509
Viun3g03042 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Viun3g03042 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Viun3g03042 160 SUPERFAMILY EF-hand 5 148 IPR011992 -
Viun3g03042 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Viun3g03042 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03042 Viun-Chr3 36807373 36808129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03042 2 160 EF-hand Containing Proteins AT3G25600 74.843 2.29e-87 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03042 K13448 - gmx:100797705 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03042 3 36807373 36808129 Viun3g03042 3 36807373 36808129 ECH