Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01650 ATGGCTTCCTCGGAGATCGAGGTGGTATCATCATCATCATCGGTCTCCAAACCCAACGACCAGCCTCTTATCCTCGACGTCTTCACCGCCTCTACTCACGGCGACTTCAACAAACTCAGAACCTTCGTCGAACAACACGGTGCCTCCGTATCGGTTCCTGATGTTGGTGGCTATTACGCTATTCAATGGGCCTCGCTTAACAACTTTCATGACATTGCGCACTATCTCATTCAGCATGGAGCGGATGTGAATGCTAAAGACAACATGCAACAAACAGCATTGCATTGGGCTGCAGTTCGTGGTTCAATTGCAGCTGCTGATGTACTTATGGAGAATGGTGCTCGGATTGAAGCTGCTGACTTAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGTCAGACAGCTTTCTTAAATCACATTGTAGCGAAGTACCATGCCGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCACTGGGCTGCATATCAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCATGCCAAGGAAGACAAGATAAAGATGGCTGTACACCATTGCACTGGGCTGCATTAAGAGGACATTCAGAGGCATGCGCTGTGCTTGTACATGCAGGCACAAAGGAAGAATTGATGGTGAAGGACAATGCTGGACACACGCCTGTACAACTTGCATATGATAAAGGTCATCGACATGTCGCTCCTTTCCTTTCAAATCAACAACAGGCTCATAGCAACAACTGGAAAGGGAAAGTTTGCCGTGGGGTGGTGACAGATATTGGTTATGCTCCCATCTTATTGTTTATTATGATCTTGTCCCTGATCCTCTTCATCAACTCAGTTATCGCTGCTCCTAACCTTGGAAAGATTACTGCTTCTGTTGGACTTTGGGCATGGACTGCACTTTCCCTAGAAGCTGCTGCCCTGATTATGTTTTATAGGTGTAGTAGCAAAGATCCTGGTTATATAAAACGGCTGGGAGACTTGGGTACTCAAAGTGATACTGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGACAGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGATGTGTGGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCCTTGGAACTTTGACTTCTTCCGTTTCTGGTGCCGTTGCAGTTCAAAGAATTTGGACATCTACACCAACATTACTGGCAGGAGAAACATGGATCCATTATATGTTAGTACAACATCCAGGTTTAGTTGTGTTTTTGGTGATGGACGCAATTGTTTTCATTGCAGCTTCAACATTAACAATAACGCAGACTTCCATGATTGCTCGAAATGTAACCACAAATGAACTAGCAAATTCTTCTCGCTATGACTATCTTCGTGGACCTGATGGGCGATTCAGAAACCCATATGACCATGGTTGTTGGAAGAATTGTGCTGACTTCCTTTCTCTGGGATATACAAATGATGATGAAATTGCTTGGCCTCGATTACAGCAGGTGGCAACTTGA 1623 0.4412 MASSEIEVVSSSSSVSKPNDQPLILDVFTASTHGDFNKLRTFVEQHGASVSVPDVGGYYAIQWASLNNFHDIAHYLIQHGADVNAKDNMQQTALHWAAVRGSIAAADVLMENGARIEAADLNGYRAVHVAAQYGQTAFLNHIVAKYHADFDVPDNDGRSPLHWAAYQGFADTIRLLLFRDACQGRQDKDGCTPLHWAALRGHSEACAVLVHAGTKEELMVKDNAGHTPVQLAYDKGHRHVAPFLSNQQQAHSNNWKGKVCRGVVTDIGYAPILLFIMILSLILFINSVIAAPNLGKITASVGLWAWTALSLEAAALIMFYRCSSKDPGYIKRLGDLGTQSDTEDPLLNIDLNSSSVWTGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSVSGAVAVQRIWTSTPTLLAGETWIHYMLVQHPGLVVFLVMDAIVFIAASTLTITQTSMIARNVTTNELANSSRYDYLRGPDGRFRNPYDHGCWKNCADFLSLGYTNDDEIAWPRLQQVAT 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01650 540 Gene3D - 118 258 IPR036770 -
Viun3g01650 540 Pfam DHHC palmitoyltransferase 363 490 IPR001594 GO:0016409
Viun3g01650 540 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Viun3g01650 540 Gene3D - 25 117 IPR036770 -
Viun3g01650 540 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515
Viun3g01650 540 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 6 526 - -
Viun3g01650 540 Pfam Ankyrin repeats (3 copies) 34 119 IPR002110 GO:0005515
Viun3g01650 540 Pfam Ankyrin repeats (3 copies) 120 181 IPR002110 GO:0005515
Viun3g01650 540 Pfam Ankyrin repeats (3 copies) 187 247 IPR002110 GO:0005515
Viun3g01650 540 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Viun3g01650 540 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
Viun3g01650 540 ProSiteProfiles Ankyrin repeat region circular profile. 156 177 - -
Viun3g01650 540 FunFam S-acyltransferase 12 142 - -
Viun3g01650 540 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Viun3g01650 540 ProSiteProfiles DHHC domain profile. 363 413 - -
Viun3g01650 540 SUPERFAMILY Ankyrin repeat 28 246 IPR036770 -
Viun3g01650 540 FunFam S-acyltransferase 143 251 - -
Viun3g01650 540 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Viun3g01650 540 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
Viun3g01650 540 SMART ANK_2a 224 253 IPR002110 GO:0005515
Viun3g01650 540 SMART ANK_2a 156 185 IPR002110 GO:0005515
Viun3g01650 540 SMART ANK_2a 56 85 IPR002110 GO:0005515
Viun3g01650 540 SMART ANK_2a 89 118 IPR002110 GO:0005515
Viun3g01650 540 SMART ANK_2a 122 152 IPR002110 GO:0005515
Viun3g01650 540 SMART ANK_2a 189 218 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01650 Viun-Chr3 11399524 11412532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01650 7 237 Miscellaneous Gene Families AT1G05640 27.160 9.91e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01650 K20032 - gmx:100807263 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01650 3 11399524 11412532 Viun3g01650 3 11399524 11412532 ECH