Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01639 ATGTCTATAACCCACAACCTCACTACTTCACTCTCTTCTACTTCTTCTGCTTTCTTAGCTCCCTCTTCTTTCAATTCTAGGGGACATGTTTCATTGCCTGTGAAGAGCGTGGGCATTTGCAAATGCGTTGCGACACCCGAGGCTGAGACTGGCTACAAGACAAGGGTCACTCGCAATCCAAATTTGGGGAAACTTCAAGCTGGCTATCTATTTCCTGAGATTGCTAGAAGAAGGTCTGCACACTTGCTGAAGTACCCTGATGCTAAAGTTATAAGCCTTGGAATTGGTGACACTACTGAACCTATTCCTGAAGTCATAACTGATGCAATGTCGAAGAGATCACAAGCATTGTCAACTGTTAAAGGATATAGTGGGTATGGTGCGGAACAAGGTGAAAAGCCATTAAGAAGTGCAATTGCTTCAACATTTTACAGCGATCTTGGCATAGAAGAGGATGATATATTTGTGTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTCGGATCAAATGTAAAAATGGCTGTACAAGACCCTTCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACTGGGCTGTACCAGAAGGATGTTGAGAAGTTTGCAAACATTGAATACATGAGGTGTAATCCGGAAAATGGTTTCTTCCCTGATTTATCTTCAATTTCTCGACCAGACATAATCTTTTTCTGTTCGCCAAACAATCCTACTGGTGCTGCAGCAACAAGGGAACAACTCACCCAACTTGTTCAGTTTGCTAAGGACAACGGCAGTATAGTAATCCATGATTCAGCTTATGCAATGTATATTTCTGGTGACAACCCACGTTCCATCTTTGAAATTCCTGGAGCCAAGGAGGTTGCCATTGAGACTTCATCATTTAGCAAGTATGCTGGGTTCACTGGAGTCCGATTAGGTTGGACTGTGATTCCAAAGGAGTTGCTGTTTTCTGATGGATTTCCTGTTGCCAGGGACTTCAACCGTATTGTATGCACTTGTTTCAATGGTGCATCAAATATTTCCCAAGCAGGTGGTCTTGCTTGCCTTTCACCAGAAGGTCTTAAGGCTATGAGAGAAGTTATTGGATTCTACAGAGAAAATACGAACATAATTGTGGAGACATTTGATTCTCTTGGATTTAAAGTGTATGGAGGGAAAGATGCACCATATGTGTGGGTTCATTTCCCTGGCAGAAGCTCATGGGATGTATTTGCTGAAATTCTTGAGAAGACTCATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTGTCAGGGTTAGTGCCTTTGGTCACAGGGAAAACGTCTTGGAGGCATGCAGAAGGTTCAAGCAGCTATACAAATGA 1377 0.4299 MSITHNLTTSLSSTSSAFLAPSSFNSRGHVSLPVKSVGICKCVATPEAETGYKTRVTRNPNLGKLQAGYLFPEIARRRSAHLLKYPDAKVISLGIGDTTEPIPEVITDAMSKRSQALSTVKGYSGYGAEQGEKPLRSAIASTFYSDLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVEKFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQFAKDNGSIVIHDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVARDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMREVIGFYRENTNIIVETFDSLGFKVYGGKDAPYVWVHFPGRSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYK 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01639 458 Pfam Aminotransferase class I and II 89 453 IPR004839 GO:0009058|GO:0030170
Viun3g01639 458 Hamap LL-diaminopimelate aminotransferase [dapL]. 57 456 IPR019942 GO:0008483
Viun3g01639 458 FunFam LL-diaminopimelate aminotransferase, chloroplastic 100 357 - -
Viun3g01639 458 SUPERFAMILY PLP-dependent transferases 69 453 IPR015424 -
Viun3g01639 458 Gene3D - 100 357 IPR015421 GO:0003824
Viun3g01639 458 FunFam LL-diaminopimelate aminotransferase, chloroplastic 343 454 - -
Viun3g01639 458 Gene3D Aspartate Aminotransferase, domain 1 70 454 IPR015422 GO:0003824
Viun3g01639 458 CDD AAT_like 91 455 - -
Viun3g01639 458 NCBIfam LL-diaminopimelate aminotransferase 57 455 IPR019942 GO:0008483
Viun3g01639 458 PANTHER AMINOTRANSFERASE 5 458 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01639 Viun-Chr3 11337554 11347869 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01639 K10206 - gmx:100801405 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01639 3 11337554 11347869 Viun3g01639 3 11337554 11347869 ECH