Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01078 ATGGAAACTGGTAGTAGGTGGTGGGGGTGGGTGGTGGTTTTCACCGTTTTCTTTGCGCCGATAATAATAATCACAACAGTGTTTCTCCAAGGAGCTACAGTGAAAGACGTTGATATCACAGAAGAGGCGGTGACGGGCTTTCTTCAAACGGATTCGCGATGGATCGTGGGCCGAGATGGGCGAAGGGTGAAGCTGGCGTGTGTGAATTGGGTTTCGCACTTGGAAGTTGTGGTGGCGGAAGGGCTGAGCAAAAGGCCCGTGGATTCAATTTCGAAGGAAATAAAGTCCATGGGCTTTAACTGCGTGAGGCTCACTTGGCCCACTCTTTTGGCGACCAACGACTCTCTGGCTTCTCTCTCCGTTAGAAGCTCCTTTCAGAAGCTGGGCCTCCTTGAATCCGTCGCCGGAGTTCAGACCAACAACCCCTCCATCATCGATCTTTCCCTCATCCAAGCTTTTCAGACAGTGGTGAAGAGTCTTGGAGACAATGGTGTGATGGTGATTTTGGACAACCACCTGACCCGGCCAGGATGGTGTTGCGGTAACTCAGACGGCAATGGCTTCTTCAATGACAATTTCTTCAACCCAGATCAGTGGATATTGGGCCTCACCAAAATGGCCACTCTTTTCAAGGGAGTTACTACAGTGGTGGGTATGAGCTTGAGGAATGAACTGCGAGGATCTAAACAGAACGCTAATGATTGGTACAAGTATATGGTAAGAGGAGCAGAAGCAGTTCATGCAGCAAATTCAGATGTTCTTGTCATTCTGTCTGGTCTAAATTTCGACACAGATTTATCATTTATTCGAGATCGACCAGTGAGCCTAACGTTCAAAGGAAAACTGGTATTTGAGATGCACAGATATGGCTTCACTGATGGTCAAGCTTGGGTTGATGGAAACCCAAACGAAGTCTGTGGAAAAGTGACAGATACTATAAAGAAAACATGTGCATACTTATTAGACCAAGGATTGCCATTGTTTGTGAGTGAGTTTGGTGGAGATTTGAGAGGTACCAATGTCAATGACAATCGATACCTTACTTGCATTTTGGCATTGCTTGCTGAGCTTGATTTGGATTGGGCTTATTGGTCACTTGTTGGCAGTTACTACTTTAGAGAAGGTGTTGTAGGAATGGAAGAGTTTTATGGGGTTCTCTCTTGGGATTGGAGTCAAGTTAGAAGTATCAGTTTCTTAAACAGAATCACTGCACTCCAACTTCCATTTAGAGGACCAGGTATCACAGAAGGCGATTCACAGAAATTGATGTTTCATCCCTTGACAGGTCTCTGCATCATAAGCACATCACAGCAAAAAACACTAACACTGGGTCCTTGTGCTTCTTCTGATGATTGGGAATACACATCTCAGAAGACTTTATTAGTAAACAATACAAACTTATGCATACATGCAGAGGCACAAAGGAAGCCTGCAACACTTAGCAGAGCATGCTCAGATTCTAACTCTATATGGGAAGTGATATCAGATTCCAACATGCACTTTTCATCTAAACTAAGTGATGGTTCTAATGTATGTTTAGATGTAGATGATAATAACATCATTGTGACTAATACTTGTAAATGCTTGAGTAAAGATAACAAGTGTGAACCTGGAAGTCAATGGTTCAAACTTATTGACAGTGGAAGGAGGTCGATCTCAACAACCTCAGTAATGTCCAATATTTTGGATTCATCAAACCTTTTGTGGGAACCATTGAGCGTGATGTAG 1728 0.4375 METGSRWWGWVVVFTVFFAPIIIITTVFLQGATVKDVDITEEAVTGFLQTDSRWIVGRDGRRVKLACVNWVSHLEVVVAEGLSKRPVDSISKEIKSMGFNCVRLTWPTLLATNDSLASLSVRSSFQKLGLLESVAGVQTNNPSIIDLSLIQAFQTVVKSLGDNGVMVILDNHLTRPGWCCGNSDGNGFFNDNFFNPDQWILGLTKMATLFKGVTTVVGMSLRNELRGSKQNANDWYKYMVRGAEAVHAANSDVLVILSGLNFDTDLSFIRDRPVSLTFKGKLVFEMHRYGFTDGQAWVDGNPNEVCGKVTDTIKKTCAYLLDQGLPLFVSEFGGDLRGTNVNDNRYLTCILALLAELDLDWAYWSLVGSYYFREGVVGMEEFYGVLSWDWSQVRSISFLNRITALQLPFRGPGITEGDSQKLMFHPLTGLCIISTSQQKTLTLGPCASSDDWEYTSQKTLLVNNTNLCIHAEAQRKPATLSRACSDSNSIWEVISDSNMHFSSKLSDGSNVCLDVDDNNIIVTNTCKCLSKDNKCEPGSQWFKLIDSGRRSISTTSVMSNILDSSNLLWEPLSVM 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01078 575 Gene3D Glycosidases 44 405 - -
Viun3g01078 575 CDD RICIN 421 533 IPR000772 -
Viun3g01078 575 Gene3D - 423 542 - -
Viun3g01078 575 SUPERFAMILY Ricin B-like lectins 423 526 IPR035992 -
Viun3g01078 575 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 34 547 - -
Viun3g01078 575 Pfam Cellulase (glycosyl hydrolase family 5) 86 366 IPR001547 GO:0004553|GO:0071704
Viun3g01078 575 SUPERFAMILY (Trans)glycosidases 46 395 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01078 Viun-Chr3 6754377 6757967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01078 48 549 Glycoside Hydrolase AT1G13130 59.802 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01078 - - gmx:100818309 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01078 3 6754377 6757967 Viun3g01078 3 6754377 6757967 ECH