Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00883 ATGGCTTCCTCTCATGGGAATGCACACTCCGATGCTGCAAAGATGGAACAGATAATCACTGAGTTCTTTGCCAAGAGCCTTCATATAATACTCGAATCAAGGGCACCCTGTGTGTCCTCTCGCAATTTCTACGGTGATCAAGCTGCTATGTCTCCATGTTCATCGTCTTCATCTTCGTCCAGTGTGCGGCCGAGGGATAAGTGGTTCAATTTGGCGCTCCGGGAGTGCCCGGCGGCGTTGGAAAACATTGACATCTGGCGCCAGAACAACATTGAGTGCATAGTGATTGATGTGATTTTAGTGCAGAGGCCTCTGGATTGGGACCCTGTGACTGCGAGTCTTTCTCCAAGAAGGGTTCTCCCAAGGAGTTCTTCGCTGAAGGAAAGATGCCCTTTTGGCTGGAACACTGATCAGGAAGAATTGGGGGTTGTGGGAAGGAGTGAAAAGATTGTGGAGAGATGGGTTGTGCAGTATGAAAATAGGAAGACTAGGGATTCTAGTTCTTGCAGTAGGAGGTCAAGCAGTGTTTCTCTGCATAACTCGTATAAGAAATCAACTTTGCTTCTGAGGTCTTTGTATTCCACTCTTAGACTTTTACCTGCCTATAAAGTATTCAGAGAGCTTAATTCTTGTGGACAAATTAGGGACTTTACCCTTGCTCATCGTGTGTCTTCTTTTGTTGAGCCCTTCACCCGGAAAGAAGAGGCTGAAATGATGAAATTCGGGTTCACCCCTGTGGATACTTCTTCTGGTAGACTGTGTCTTAGTGTGATGTATTGCCCCGTGGTCTCACGTGTGAGCTCAGAACCTTCAACTCCAATTTCCCCACAAGTTATTGCAGACTATGTTGGGAGTCCATTGGCTGATCCATGGAGGAGGTTTCCTTCTGTTCCTGTGGCAGGTTTGCCATCTCATGGCTCTCCATCATCGTTGCCATCTTCAAGGCAGCGCAGTATGAGTTTCGATCATTATAGAGCTTCACCTCCATCTTATTTACCTTCCCCTACTTATTCAGAATCACTCTCATCAGTGTATAGTGCAAATTTGCGACGTTTCCCTCCTGCAAGTTTGCCTCCTCATCCAACTGAGATGTCTTTGATTCAAAAAAAGAACACAAATTTTGATGATTATTATCACTCTCGATCACCTTCAACCGATAATTCAGGACCATTACCATGCAAACCACTTTTACGATCTGGAAGTGCTCCTGTCAGCATACCTGCTGAAGTTGCTGATTTTCCTGGTTATTCCAATAGGCATAATAATGTGCCTCCGTCTCCTCCCCTAAGAGGTTCAAGGGGCACTGTTAAGATTGATAGATGTACAAATGCTATGCAAACTGGTGCAACAGCTGAGAAGTCGTTTTCTCTTGGAAAAGATGAGTCTCGAAAATATTCTGGAGTCAAGATATCAACTAACAGCTCGCCCTCCAGTAGGTCTTATCAGGATGATTTTGATGATACTGATTTTACTTGTCCATTTGATGTCGATGATGATGATATTACGGATCCAGGAAGCAGAGCTGAATCTCTAGATCATGGTCTTTTGGTTGAGACATTTGAAGCTGGAGGATTCTTTCCCGTTAGAAAGTCTCATGATGCTGCTGTTGGTGCGCTTGTACAAATGCTGAAGAAAGCACCACCACTCCGTCAAGATTTCTCCACTTCACAACACCTGTCACAAGGAGTTACAAATCCTGAAACCTGGAACAACAACCTTGAAGGGCCCAATCAGATCCTGGAAGCATCAAAACAAGTGAGCATAATGTCTTCTGGGATCATAGCCACCAGAAAAACCACAGCTGATGCACTGGAAGAGTTCCAAGGTTACAAAGAGATGAAAAACCTGTTGCTTATGCGAGATAGTAAGCACCAGACATAG 1881 0.4476 MASSHGNAHSDAAKMEQIITEFFAKSLHIILESRAPCVSSRNFYGDQAAMSPCSSSSSSSSVRPRDKWFNLALRECPAALENIDIWRQNNIECIVIDVILVQRPLDWDPVTASLSPRRVLPRSSSLKERCPFGWNTDQEELGVVGRSEKIVERWVVQYENRKTRDSSSCSRRSSSVSLHNSYKKSTLLLRSLYSTLRLLPAYKVFRELNSCGQIRDFTLAHRVSSFVEPFTRKEEAEMMKFGFTPVDTSSGRLCLSVMYCPVVSRVSSEPSTPISPQVIADYVGSPLADPWRRFPSVPVAGLPSHGSPSSLPSSRQRSMSFDHYRASPPSYLPSPTYSESLSSVYSANLRRFPPASLPPHPTEMSLIQKKNTNFDDYYHSRSPSTDNSGPLPCKPLLRSGSAPVSIPAEVADFPGYSNRHNNVPPSPPLRGSRGTVKIDRCTNAMQTGATAEKSFSLGKDESRKYSGVKISTNSSPSSRSYQDDFDDTDFTCPFDVDDDDITDPGSRAESLDHGLLVETFEAGGFFPVRKSHDAAVGALVQMLKKAPPLRQDFSTSQHLSQGVTNPETWNNNLEGPNQILEASKQVSIMSSGIIATRKTTADALEEFQGYKEMKNLLLMRDSKHQT 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00883 626 PANTHER UNCHARACTERIZED 3 623 IPR040182 GO:0000045
Viun3g00883 626 MobiDBLite consensus disorder prediction 306 323 - -
Viun3g00883 626 MobiDBLite consensus disorder prediction 302 325 - -
Viun3g00883 626 Pfam Autophagy-related protein 13 19 259 IPR018731 GO:0006914|GO:1990316
Viun3g00883 626 MobiDBLite consensus disorder prediction 449 484 - -
Viun3g00883 626 MobiDBLite consensus disorder prediction 467 481 - -
Viun3g00883 626 MobiDBLite consensus disorder prediction 555 574 - -
Viun3g00883 626 FunFam Autophagy-related protein 13b 13 265 - -
Viun3g00883 626 Gene3D HORMA domain 4 264 IPR036570 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00883 Viun-Chr3 5446573 5452301 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00883 K08331 - gmx:100798585 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00883 3 5446573 5452301 Viun3g00883 3 5446573 5452301 ECH