Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00873 ATGGCCCCGAGGCTGAAGCCGGCGGCGAAAGCGGCGTACCGGAACGCGAAAGCGGCATACGACATCGCGAATGCTGAGGGAAACCACCGGGAGGAGGCGCGATGGGCCAACGTCATCGGCGACATACTGAAAAACGGTGGAGTGTACCGCAAGGCCCTGAAATGGCTCCGAATTGATTACGAAATTTCGATCAAACATTTACCGGACAAGCACTTGCTCCCAACCTGCCAATCCCTCGGCGAAGTGTACTTCCGCCTCAATAAGTTCGAAAAAGCCCTAATTTTCCAGAAAAAACACCTCGAGCTCGCCAGGGATGCAAACGACATCGTTGAGCAGCAGCGAGCGAACACGCAACTCGGTCGGACTTACCACGAATTGTTCACGCAATCGGATTATGACCACAATTCGATTCGCAACGCAAAGAAGTACTTTAAGTGCGCGATGGATCTCGCGGTGAAGCTCAAGGAGAATCCTCCGAACAGCAAGTCTTCTTTTCTCGCGGAGTACATCGACGCGCACAACAACATAGGCATGCTTGAAATTGATCTTGAAAACTTGCACAAGGCGCAGAAGATTTTAATTACTGGATTGGAGATTTGTGATGAAGAGGAGGTCGCTGAATTCGATGATGGCCGCAGTAGGCTCCATCACAACCTTGGGAATGTGTATATGGAACTTAGGCTTTGGGATGATGCTAGGAAAAACATCAAGAGGGATATTGTGATTTGTAACAGAATTGGACACTGTCAAGGGGAGGCCAAGGGGTATATTAATCTTGGTGAAATGCATTACAGGACTCAGAGGTACGATGATGCAATGGCTTATTACAAGAAAGCGTTTGGTTTGGCGAAGTCCTTGGAGGATGAAAAAACCTTGGTTGAGCAAATTGAGCTGAATATTGAAACTGTGAAAAAAGCTGTTAAGGTAATGGCTGATATAACGAAAGAAGAGCAAAGCCTTAAAAAGCTTAAGAGAGATATAGCCGCAGCTAGAGGTACATCGCATGAGCGGAAATTCTTGCTGCAGCAGAATGCAGTACTTGAAAGCCTTGTTGAGAAAGCAAGGACGATCTCAGCGTTGGAGAAGCTTTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAGTGAACTCTGTGATAGGCAGAGACTGGCTGATTCATATTCGGATGTTGCAGAATCATACCAGAAACTGAGAAAATTCAACAAAGCTATCAAATGGTACAAAAAGAGCTGGCAAATGTTCAAAAATATTGGTAACTTAGAGGGGCAAGCGCGGGGGAAAATTAACATTGGTAATGTTTTGGATTCTACAAACAATTGGAGAGATGCACTGGATGCGTTTCAAGAGAGTTACAGTATTGCTGTTGAAGCAGATCTGCCTGATTTGCAACTCTCTGCCTTGGAAAATATGCATTATAGCAACATGATAAGATTTGATGATGAGGATGAGACCAGGAGGTTGAAACTTCTAATTGATAAACTAAAAAAATCCAAAGAAAAAGAGGCAGCAGCAAAAAATATGTCAGAGGATTGTTGCTCCGAAACTGATACTGAAGCAGATGAAACTGATACTGAAGCAGATGATTATCTGTCTAACAGTGGGTCTGATAATATTTGCTTTCCAAAGACAATTTCTCGATCAAAAGCTCTAACTACTGGAGAAGAATCGGAAGATGACGCACCACTTATGTCCCTATATCAGTCCATAAAAAGCTCATCCAAAAATAAAACAGGCTACAAAGAAAGTCTTCTCAACTCTACCAAGCAAGCAGAGCAGTCACCCAGTAGTCTGAAAAATCAAACCAGTGATCATCAGACAATTGTTAGTCGAAAACGTCCGCATGTGATTCTTTCTGATGATGATGATGATGATGATGATGAGGTGAAATGTTCAAGCAGAAAAGATCATGATTGCCTGGTAGATGATTTGCCTACTTATAATGCCATTAAGAGTAAAGCCAGTCCTTGTAAAATTCAGGTTATCTCCGAGCACGGATCTAAGAGTGCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAATGTTCAAGTCCACATACAGCCACAAAAACTGGCAGACATTCTAGGTCTTTGAGCAATGATGTAGTTGCTGAAGCCAATTTCCGTACTGGTTCTAAATGTGACACTGATTTCTCTGGCAAACAAAATGATATTTCCCATCCCAGGTTGCATCATCCCCAAAATGACTCCCAGAAATGTATTGCATGTCGGATTGGGAATGATATAATGCACGTTGAAGCAACCTTGTGTACCACCGGTGATCAGTTAAACATTGACTCTTTGAAGGCTGTAGTTGCATGCTTATATTATCTACAATTTCCGTCGGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTGAGCATATGAAATGTGCTGGAAGAAATATGGAATCCCTGGAAACTGTTGAACATCTTAAAGAAGTTATGGGAAATGACATGGTTGAAGCTTCTGTTGATGGATGGATTCACAAGCGCTTGATAAAAATGTACGTAGACTGCTGCAAGGAGTTGTCTGAGGTACCGAACATCAAGGTACTGACGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGATTGCGACCTGCAAGATTTGTCAATTACACCATTGATAAATGCACTGCATTCCCAAAAGTCATTTGCGATGCTGGACCTCTCTCACAATTTGTTAGGAAATGGAACAATCGAAAAACTTCAGAAAGTGTTCGCAGCATCGGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGTAATCGTTTTGGCCCGACAACCTTGTTTCAGATTTGCGAGTGTTCACTGCTATTTGCTAGACTAGAAGTTCTTAACATATCTGGAAACCGTCTTACTGATGCATGTGGATCATACCTTTCGACAATCTTAAAAAACTGTACAGCTCTTTGTAGCTTGAACATAGAGAACTGTTGTGTCACATCCAGAACAATTCAAAAAGTAGCAGATGCATTGGACTCCAGATCTGCCCTTGCCCATCTATGTATAGGATACAACAGCCCTGTATCAGGAAATGCTACAGTTAATCTTCTGTGCAAGCTTTCTACTCTGAAGAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCAGTTGTCGATACCCTTTGCAAGCTTGCAGGGAGCTTAACTTTATCAGGACTAATGCTTGGAGGCACGGGCATTGGAACTGAAGGGGCGAACAAATTAGTAGATTCTTTGCTCAAAGGGAATGAAGAGCTTGTGAAGCTTGACCTATCATATTGTGGTCTAACATGTAACTTTGTTTTAAACACCAGTGTTAATTTCTTTTGTTCCATCCTAGAGCTAAACCTAGAAGGAAATCCTATCATGCCTGAGGGTAGCGATACTTTATTTTCACTTCTCGTAAACCCCCAGTGCTGTCTCAAAGTTTTGGTTCTTAGAAAGTGTCAACTTGGGCTTACTGGAATCCTTCACATAATTGAGGCTCTTGCAGAGAACAGCTGCATTGAAGAACTTAATATTGCTGATAATTCTGTTCCAAAGGAAAATTCCGCTCTACAATATGATTTATCAGTAAAAAGCTGCTCACAAAACCAGGAGCAGAAACTAGATACTATGCAAGTTGATGATAATCAAGAGGTCCTTTGCTCTTTAAACGCAGCCAACTACAAGCTGGAAGTTGCTGATAGTGAAGATATTCCTGTGGAAGCTGCTGCTTCTGGAATTGACGACAGCTGTGCCAGTTCATGTCAAAGAAATTCATCTCCCGAGTGCCATTTGGTGCAACAGTTTGCAATTGCTATTGGTAAGGCAAAGAACTTGCAATTACTAGACCTTAGCAATAATGGTTTTTCTGCACAAGCTGCGGAAACATTCTATGGCTCGTGGGCGACTTTACGACCCCTTTCAAGTCAGAAGCACATTAGCAAGCAGATTGTTCATTTCTCAACTAGGGAAAATAAATGCTGCAGAGTGAAACCTTGCTGCAAGAAAGCTTGA 4011 0.4206 MAPRLKPAAKAAYRNAKAAYDIANAEGNHREEARWANVIGDILKNGGVYRKALKWLRIDYEISIKHLPDKHLLPTCQSLGEVYFRLNKFEKALIFQKKHLELARDANDIVEQQRANTQLGRTYHELFTQSDYDHNSIRNAKKYFKCAMDLAVKLKENPPNSKSSFLAEYIDAHNNIGMLEIDLENLHKAQKILITGLEICDEEEVAEFDDGRSRLHHNLGNVYMELRLWDDARKNIKRDIVICNRIGHCQGEAKGYINLGEMHYRTQRYDDAMAYYKKAFGLAKSLEDEKTLVEQIELNIETVKKAVKVMADITKEEQSLKKLKRDIAAARGTSHERKFLLQQNAVLESLVEKARTISALEKLCEFAKEKKKIASELCDRQRLADSYSDVAESYQKLRKFNKAIKWYKKSWQMFKNIGNLEGQARGKINIGNVLDSTNNWRDALDAFQESYSIAVEADLPDLQLSALENMHYSNMIRFDDEDETRRLKLLIDKLKKSKEKEAAAKNMSEDCCSETDTEADETDTEADDYLSNSGSDNICFPKTISRSKALTTGEESEDDAPLMSLYQSIKSSSKNKTGYKESLLNSTKQAEQSPSSLKNQTSDHQTIVSRKRPHVILSDDDDDDDDEVKCSSRKDHDCLVDDLPTYNAIKSKASPCKIQVISEHGSKSAINVEESSSSFKCSSPHTATKTGRHSRSLSNDVVAEANFRTGSKCDTDFSGKQNDISHPRLHHPQNDSQKCIACRIGNDIMHVEATLCTTGDQLNIDSLKAVVACLYYLQFPSEKRSEGLLPIIEHMKCAGRNMESLETVEHLKEVMGNDMVEASVDGWIHKRLIKMYVDCCKELSEVPNIKVLTKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFAASGQSYGGLTLDLHCNRFGPTTLFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCCVTSRTIQKVADALDSRSALAHLCIGYNSPVSGNATVNLLCKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGSLTLSGLMLGGTGIGTEGANKLVDSLLKGNEELVKLDLSYCGLTCNFVLNTSVNFFCSILELNLEGNPIMPEGSDTLFSLLVNPQCCLKVLVLRKCQLGLTGILHIIEALAENSCIEELNIADNSVPKENSALQYDLSVKSCSQNQEQKLDTMQVDDNQEVLCSLNAANYKLEVADSEDIPVEAAASGIDDSCASSCQRNSSPECHLVQQFAIAIGKAKNLQLLDLSNNGFSAQAAETFYGSWATLRPLSSQKHISKQIVHFSTRENKCCRVKPCCKKA 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00873 1336 Coils Coil 286 333 - -
Viun3g00873 1336 FunFam Protein TONSOKU 9 162 - -
Viun3g00873 1336 SUPERFAMILY TPR-like 12 204 IPR011990 GO:0005515
Viun3g00873 1336 Gene3D Tetratricopeptide repeat domain 6 313 IPR011990 GO:0005515
Viun3g00873 1336 Gene3D Tetratricopeptide repeat domain 314 477 IPR011990 GO:0005515
Viun3g00873 1336 Gene3D Ribonuclease Inhibitor 839 1242 IPR032675 -
Viun3g00873 1336 MobiDBLite consensus disorder prediction 502 532 - -
Viun3g00873 1336 SMART tpr_5 253 286 IPR019734 GO:0005515
Viun3g00873 1336 SMART tpr_5 384 417 IPR019734 GO:0005515
Viun3g00873 1336 SMART tpr_5 424 457 IPR019734 GO:0005515
Viun3g00873 1336 SMART tpr_5 170 203 IPR019734 GO:0005515
Viun3g00873 1336 SMART tpr_5 213 246 IPR019734 GO:0005515
Viun3g00873 1336 SMART tpr_5 73 106 IPR019734 GO:0005515
Viun3g00873 1336 Pfam Tetratricopeptide repeat 75 108 IPR019734 GO:0005515
Viun3g00873 1336 FunFam Protein TONSOKU 839 1211 - -
Viun3g00873 1336 PANTHER PROTEIN TONSOKU 12 1335 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Viun3g00873 1336 Pfam Tetratricopeptide repeat 384 454 - -
Viun3g00873 1336 Pfam Tetratricopeptide repeat 213 284 - -
Viun3g00873 1336 SUPERFAMILY RNI-like 855 1306 - -
Viun3g00873 1336 ProSiteProfiles TPR repeat profile. 253 286 IPR019734 GO:0005515
Viun3g00873 1336 MobiDBLite consensus disorder prediction 576 628 - -
Viun3g00873 1336 MobiDBLite consensus disorder prediction 513 527 - -
Viun3g00873 1336 SUPERFAMILY TPR-like 162 453 IPR011990 GO:0005515
Viun3g00873 1336 SMART LRR_RI_2 974 1001 - -
Viun3g00873 1336 SMART LRR_RI_2 1058 1085 - -
Viun3g00873 1336 SMART LRR_RI_2 1142 1169 - -
Viun3g00873 1336 SMART LRR_RI_2 887 914 - -
Viun3g00873 1336 SMART LRR_RI_2 946 973 - -
Viun3g00873 1336 SMART LRR_RI_2 1113 1140 - -
Viun3g00873 1336 MobiDBLite consensus disorder prediction 576 604 - -
Viun3g00873 1336 FunFam tonsoku-like protein 317 477 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00873 - - gmx:100805682 2192.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00873 3 5405639 5415951 Viun3g00873 3 5405639 5415951 ECH