Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00859 ATGTTGCTTCTTCTTCTACATTCTAAACCTAAACCTTCGAATCGGAAGAAAATGAAGGGTGGCACGGTTCAGATTGTCTGGCACGAGAGAAAACCTGTCTTAACCCTCGATTTTCACCCTCTCTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTTTGGTCGATAAAGCCCTCGGGCACGGAGAAGCTCCCCTTAGTTTCCTATCTCAGTAACCTCACTTATCATAGCTCTGCAGTGAATGTTATTCGCTTCTCATCTTCTGGGGAATTGCTGGCCTCTGGTGCTGATGGAGGGGACCTGATAATATGGAAGCTAAATTCTTCCGATACTGGTCAGACATGGAAGGTTATGAAGATGTTACGATCTCATCTCAAGGACATTTTGGACCTGCAATGGTCTTCCGATGCCAAATATATCATATCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATGCCCATGCGCACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGGAAATATGCTTCTTCTCTTAGTTCTGATAGGACTTGCAGAATTTACATGAATAAGCCTCATAAATCAAAAGGCACTGAAAAAGTTAATTATGTTTGCCAGCAAGTCATTTCTAAGGCAGATCAGCCATTATTTAAAAATTCTCAGGATACAAAAATTCACCTCTTCCACGACGAGACATTGCCATCTTTTTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTTTAGTTGTGCCTGCAGGTTCTTACAAAACTAATACTGCATCTGAGGCTGTGAATGCGGCTTACATAATTTCTCGAAAAGATCTTTCTAGGCCTGCTAGACTGCTCCCCAGCACAAATAAAGCTGTTGTAGCGGTCCGGTTCTGTCCCATAATTTTTAAACTTCGGGGAACGAACTCTCTCGACTCAGTTGGGGTATTCAACCTCCCATATCGCATCATATTTGCCCTAGCCACTTTGAATTCGCTGTACATTTATGACACCGAGAGCATATCTCCGTTAGCTGTATTAGCTGGTCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCGTTATCTGGCATTGTCATCACAAGATGGTTTCTGCTCTTTGGTAGAATTTGAAAATGACGAACTTGGATCACCTTACTCTTTATCTGAAGGAAAAGTCGAGGAGGATAGTAAGAGTACTGTACAGACAGGCAATAACACTGCCACTGTACCAACTGGGAATTTTGGTGCAGTTCTATCAGAGAGCAAGGACATGGAATTAGAAGCGCGGGCTGGTGCGTCTGGGAATATAGGTGCTGCAATATCAGAAAACCAGAGCACTGTTACCCAAGAGAAGCCTGACAACATGGTCATCGAGGCAACTGGGAATGTTGAAGGGGTTATAGCCAATAGTAGGAAAAATGAAGCAGAAGAGAAAACCGATGACATGGTTATTGAAACAACTGGAAGAATTGGTGCTGCTGAATTAGATAGAAAAAGAAAAGCTGAACCAGAAGATAATGCAGCGAAACAGCCATGGAATTTGGGTACAGTTAGTTTTGGAGCTCAAGACAAGGCTGGGCAACAATTGTCCAGTTCGAAGAGTACACCCTTGTCTAATAAGCCAGCCAGGAAGCGTATTACTCCAATTGCCCTTGATCCATGA 1695 0.436 MLLLLLHSKPKPSNRKKMKGGTVQIVWHERKPVLTLDFHPLSATLATAGADFDIKFWSIKPSGTEKLPLVSYLSNLTYHSSAVNVIRFSSSGELLASGADGGDLIIWKLNSSDTGQTWKVMKMLRSHLKDILDLQWSSDAKYIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYASSLSSDRTCRIYMNKPHKSKGTEKVNYVCQQVISKADQPLFKNSQDTKIHLFHDETLPSFFRRLAWSPDGSFLVVPAGSYKTNTASEAVNAAYIISRKDLSRPARLLPSTNKAVVAVRFCPIIFKLRGTNSLDSVGVFNLPYRIIFALATLNSLYIYDTESISPLAVLAGLHYAAITDITWSSDARYLALSSQDGFCSLVEFENDELGSPYSLSEGKVEEDSKSTVQTGNNTATVPTGNFGAVLSESKDMELEARAGASGNIGAAISENQSTVTQEKPDNMVIEATGNVEGVIANSRKNEAEEKTDDMVIETTGRIGAAELDRKRKAEPEDNAAKQPWNLGTVSFGAQDKAGQQLSSSKSTPLSNKPARKRITPIALDP 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00859 564 MobiDBLite consensus disorder prediction 522 552 - -
Viun3g00859 564 ProSitePatterns Trp-Asp (WD) repeats signature. 143 157 IPR019775 -
Viun3g00859 564 MobiDBLite consensus disorder prediction 505 564 - -
Viun3g00859 564 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 160 - -
Viun3g00859 564 MobiDBLite consensus disorder prediction 396 423 - -
Viun3g00859 564 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 18 564 IPR045145 GO:0006335
Viun3g00859 564 SUPERFAMILY WD40 repeat-like 20 384 IPR036322 GO:0005515
Viun3g00859 564 ProSiteProfiles Trp-Asp (WD) repeats profile. 26 60 IPR001680 GO:0005515
Viun3g00859 564 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 165 IPR001680 GO:0005515
Viun3g00859 564 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 76 111 - -
Viun3g00859 564 SMART WD40_4 69 108 IPR001680 GO:0005515
Viun3g00859 564 SMART WD40_4 20 58 IPR001680 GO:0005515
Viun3g00859 564 SMART WD40_4 159 198 IPR001680 GO:0005515
Viun3g00859 564 SMART WD40_4 346 386 IPR001680 GO:0005515
Viun3g00859 564 SMART WD40_4 117 156 IPR001680 GO:0005515
Viun3g00859 564 Gene3D - 276 498 IPR015943 GO:0005515
Viun3g00859 564 ProSiteProfiles Trp-Asp (WD) repeats profile. 76 117 IPR001680 GO:0005515
Viun3g00859 564 MobiDBLite consensus disorder prediction 408 423 - -
Viun3g00859 564 FunFam Chromatin assembly factor 1 subunit FAS2 21 266 - -
Viun3g00859 564 Gene3D - 5 270 IPR015943 GO:0005515
Viun3g00859 564 Pfam WD domain, G-beta repeat 119 156 IPR001680 GO:0005515
Viun3g00859 564 Pfam WD domain, G-beta repeat 28 58 IPR001680 GO:0005515
Viun3g00859 564 Pfam WD domain, G-beta repeat 75 108 IPR001680 GO:0005515
Viun3g00859 564 Pfam WD domain, G-beta repeat 160 197 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00859 35 214 Miscellaneous Gene Families AT5G08390 24.044 1.11e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00859 K10751 - gmx:547606 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00859 3 5275317 5279469 Viun3g00859 3 5275317 5279469 ECH