Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00835 ATGCACCTTCACAAGCTTTCTAGCATTCCTTCCTCTTTGGCAGGGAATGCGTTCTTTTTGGTGGGTCACCGAGTTTTGGACATAAGAACGAGTAATGATTGTTTATTCCGGAAGAATCGGAGGTGGGTCGGAGCATCCATTTCGTGTTCTGGTGTTAGGAACGATTTGCCTTCTATTGAACAGCTTAGTGATGCACGGGTTATATACTCCGTCGCTGCATCTATGGGGCACAACCAGGAGGCTCATCCAGAATCTCATTTTCGAGTTCCTGCAATTGTGAATGCTCTAGAAGAAATGCAGCTCTCTTCAAAGTTCCGTGGCTCTGAGTTAATTGAACTTCAAAATTTTGAGCCTGCTTCAGTAGATGATATTGCAAGTGTGCATGCAAGGGCCTATGTTTCTGGACTTGAAAAGGTTATGGATCGGGCTGTGGAGAAGGGCCTCATTTTCGTTGAAGGTTCTGGACCAACATATGCCACTGCCACTACCTTTCAGGAGTCAATAATTGCAGCTGGTGCTGGATTAGCCTTAGTGGATTCAGTGGTTGCAGGTTCAAAGATAAAGAGTGATGCACCCACTGGTTTTGCTCTGATAAGACCGCCAGGACATCATGCTGTTCCGCAGGGACCTATGGGCTTCTGCATTTTCAGCAATGTGGCCATTGCAGCCCGTCATGCTCAGCGTGTCCATGGACTGAAGCGTGTGTTTATTATTGATTTTGATGTTCATCATGGGAATGGAACAAATGATGCTTTCTATAATGATCCAGATGTATTTTTCCTTTCGTTTCATCAAGATGGAAGCTACCCAGGTACCGGTAAATTTGATGAAGTGGGAAGTGGAGATGGTGAAGGAACCACATTAAATCTGCCTCTTCCTGGAGGCTCAGGTGATACTGCTGTTAGAACCGTTTTCGATGAAGTTATTGTACCATGTGCACAAAGATTTAAACCAGACATCATTCTTGTTTCTGCTGGATATGACGGGCACGTGTTGGATCCACTCGCTAATCTTCAATATACAACTGGAACATATTACATGCTAGCATCCAGTATTAAACAACTAGCGAGGGATTTATGTGGTGGACGATGTGTGTTCTTCTTGGAAGGAGGATATAATCTGAAGTCTCTGTCATATTCAGTGGCAGACACATTCCGTGCTCTTCTTGGTGACAGAAGCTTGGCATCTGAGTTCGATGACCCTAACATTTTGTACGAAGAGCCATCTACAAAAGTTAAGCAAGCAATTCAGAGGATAAAACACATTCATTCCCTTTGA 1278 0.4413 MHLHKLSSIPSSLAGNAFFLVGHRVLDIRTSNDCLFRKNRRWVGASISCSGVRNDLPSIEQLSDARVIYSVAASMGHNQEAHPESHFRVPAIVNALEEMQLSSKFRGSELIELQNFEPASVDDIASVHARAYVSGLEKVMDRAVEKGLIFVEGSGPTYATATTFQESIIAAGAGLALVDSVVAGSKIKSDAPTGFALIRPPGHHAVPQGPMGFCIFSNVAIAARHAQRVHGLKRVFIIDFDVHHGNGTNDAFYNDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAVRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLARDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDRSLASEFDDPNILYEEPSTKVKQAIQRIKHIHSL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00835 425 Pfam Histone deacetylase domain 82 387 IPR023801 -
Viun3g00835 425 PANTHER HISTONE DEACETYLASE 2-RELATED 56 392 - -
Viun3g00835 425 SUPERFAMILY Arginase/deacetylase 77 392 IPR023696 -
Viun3g00835 425 CDD HDAC_classII 82 389 - -
Viun3g00835 425 Gene3D Histone deacetylase domain 58 424 IPR037138 -
Viun3g00835 425 PRINTS Histone deacetylase superfamily signature 234 249 IPR000286 -
Viun3g00835 425 PRINTS Histone deacetylase superfamily signature 200 223 IPR000286 -
Viun3g00835 425 PRINTS Histone deacetylase superfamily signature 318 328 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00835 Viun-Chr3 5126675 5132454 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00835 - - gmx:100788664 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00835 3 5126675 5132454 Viun3g00835 3 5126675 5132454 ECH