Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00818 ATGGGAAATGCAGAGTCAAATACTAGCCACCGTTCCTCTGATGGAAGTTCAGCAAATACTAGCCACCAATATCATCAACCCCCTTCCTTCGATGGAAGTTCAGCAAATGCTAGCCATCAATATCATCACCCCCCTTCTTTCGATGGAAGTTCAGCAAATGCTAGCCATCAATATCATCACCACCCTTCCTATGATGAAAGTTCAGTGAATACTAGCTATCAATATCATCAACCGGTTCAACCCTCTTCTTATGCTGGGAGTTTGGTGAATACCAAACATCAGCATAAGCAGCAATCCACATATATAGCTGACAATTTCAGTTCATTGGATCAGGTTGTTTCCGCTTTGAGAGAAGCTGGTTTGGAGTCTTCGAATCTTATAATTGGTATTGACTTCACCAAAAGCAATGAGTGGACAGGAAAATATTCTTTCAACCACAAAAGCCTTCATCATATTGGAAACACTCCTAATCCATATGAGCAAGCGATCTCTATTATTGGCCGTACTCTCTCTTCGTTTGATGAAGACAATCTGATCCCATGTTTTGGATTTGGTGATGCATATACACATGATCAGAATGTGTTCAGCTTCTATCCTGATGATCGCTATTGTCATGGTTTTGAGGAAGTACTTGCACGCTACCGAGAGATTGTGCCACACTTAAAATTGGCAGGTCCAACATCATTTGCCCCTGTAATCGATGCAGCAGTTGATATTGTGGAAAGAAGCAATGGTCAATACCATGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATTCAGGCACACCACATGGAAAGTTTAGTCCACAAGAACAAGCAACTATTAATTCCATTGTTGCTGCAAGTCACCATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGTCCATGGGATGAAATGCAGCACTTCGATGATAGCATTACTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCTGAGAACAGAGATGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAATACCGGATAACCCAAAACCTACCACTTGCAAATGAAAAGTCAATTAGCTATCAACGTAAAAGGCCTTTTCCTCCGCCTAAAGAAGTAATAGATCGTGACAATGCAGTTCTAGCAGTTCCAAAATTTGAATCAGTTGAGCCATCAGCTCCAGCTACGGTAGAATCAGCATGCCCTATTTGCTTAACCAATCCGAAGGACATGGCTTTTGGATGCGGTCATACAACTTGCAAGGAGTGTGGCGTGACATTATCTTCATGCCCTATGTGCCGGCAACCAATTACAACTCGCCTGAGACTATTCACTTGA 1359 0.418 MGNAESNTSHRSSDGSSANTSHQYHQPPSFDGSSANASHQYHHPPSFDGSSANASHQYHHHPSYDESSVNTSYQYHQPVQPSSYAGSLVNTKHQHKQQSTYIADNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKYSFNHKSLHHIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDAYTHDQNVFSFYPDDRYCHGFEEVLARYREIVPHLKLAGPTSFAPVIDAAVDIVERSNGQYHVLVIIADGQVTRNSGTPHGKFSPQEQATINSIVAASHHPLSIILVGVGDGPWDEMQHFDDSITQRLFDNFQFVNFTKIMSENRDASKKEAAFALAALMEIPIQYRITQNLPLANEKSISYQRKRPFPPPKEVIDRDNAVLAVPKFESVEPSAPATVESACPICLTNPKDMAFGCGHTTCKECGVTLSSCPMCRQPITTRLRLFT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00818 452 SUPERFAMILY RING/U-box 401 447 - -
Viun3g00818 452 SMART VWA_4 123 326 IPR002035 -
Viun3g00818 452 PANTHER COPINE FAMILY PROTEIN 1 48 429 - -
Viun3g00818 452 ProSiteProfiles Zinc finger RING-type profile. 408 441 IPR001841 -
Viun3g00818 452 Pfam Copine 148 357 IPR010734 -
Viun3g00818 452 SMART ring_2 408 440 IPR001841 -
Viun3g00818 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 452 IPR013083 -
Viun3g00818 452 MobiDBLite consensus disorder prediction 1 71 - -
Viun3g00818 452 Pfam Zinc finger, C3HC4 type (RING finger) 405 446 - -
Viun3g00818 452 SUPERFAMILY vWA-like 124 307 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00818 Viun-Chr3 5058577 5066495 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00818 K16280 - gmx:100791316 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00818 3 5058577 5066495 Viun3g00818 3 5058577 5066495 ECH