Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00699 ATGGGCAACTGCTGCTCCGACGTCGCCGGCGGCAAAATGGCCGTCGGCGGCACCGCCTCCGACCACCTCAACTCGGCCAGCGGTCCCAACGACGCCGTCGATAACTTCCTCAGGTCTCGCGGTTATAACGGTCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATATAGTCTCCAAGAGTGATCCAATGCTGGTTCTTTACGAAAGAGGAAAAAATGGTGCCCTGAAGGAACTTGGCCGGACAGAAGTAGTTCTGAATTCATTAAATCCTAAATGGATTACTAAACACACTCTCACTTATCAGTTTGAGACTGTTCAGGATTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGCAAGTGTAAAGATGCTTAAGCTAGAAGAGCAGGAACATCTAGGTGAGGCAACCTGTGCATTATCTGAGATAATTACAAAGTTTGATCGATCAATGACATTAGATTTACACTCGGAAGATTTTACCACATCTACCCAGTCCCGAAACTGTGGAAAGCTCTTGGTGTATGCTGAGGAATGTGTTAGCTCAAAGACAACAATAGAGATGACACTCAGGTGTTGTGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGATTTCAAAAGTTGTGGAAGGTGGTGGTCATATTCCAATTTGCAAAACCGAAGTTATAAAGAATGATCTCAACCCAGTATGGAAGCCAGTGTTCTTGAATATTCAACAAATAGGAAGCAAGGAAAGTCCTTTGATAATGGAGTGCTATAATTTTAACAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGATATCTTTGATGGAGCTGGAGAAGCTTTATTCCAGTGGCCAAGGAGGAAATTTATATTTGTCTGCTGCTGCTGGTCATAATTCTCATAACAAGATGTTAAAGGGCCGGTTATACGTGGACAAATATGCTGAAAGTGTTCAATATTCTTTCTTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCTGTTGATTTTACAGCTTCAAATGGAAATCCACGCCTCCCAGATTCTTTGCATTATATCGATCCTTCAGGACGACCAAATGCATATCAGAGGGCAATTTCGGAGGTCGGGGAGGTCTTACAGTATTATGATTCAGACAAGCGATTTCCGACATGGGGATTTGGAGCACGACCAATTGATGGTCCTGTCTCCCATTGTTTCAATTTGAATGGAAGCAGCCATTATTGTGAGGTGGAAGGCATCCAAGGAATCATGAAGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCAATGATTGCCAGCCAATCTTTAGCAAATGGCGGAAGAAAGTACTTTGTCTTGTTAATCATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCGGATCTACCATTATCAATCCTTATTGTTGGTGTTGGAGGAGCTGATTTCAAAGAAATGGAGATTTTAGATGCGGACAAAGGAGAAAGGCTTGAAAATTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCTGAATTACCTACTCAATTTTTAACTTACGTGCGGAGCAGAAGTATCCAACCGAGTGTCTAG 1740 0.427 MGNCCSDVAGGKMAVGGTASDHLNSASGPNDAVDNFLRSRGYNGLFSQIELSFSASGLRDRDIVSKSDPMLVLYERGKNGALKELGRTEVVLNSLNPKWITKHTLTYQFETVQDLVFRVYDVDTQFHNASVKMLKLEEQEHLGEATCALSEIITKFDRSMTLDLHSEDFTTSTQSRNCGKLLVYAEECVSSKTTIEMTLRCCDLEYRDLFSRSDPFLLISKVVEGGGHIPICKTEVIKNDLNPVWKPVFLNIQQIGSKESPLIMECYNFNSNGKHDLMGKVQISLMELEKLYSSGQGGNLYLSAAAGHNSHNKMLKGRLYVDKYAESVQYSFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAISEVGEVLQYYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMKAYTSALLNVSLAGPTLFGPVISNAAMIASQSLANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLENSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLTYVRSRSIQPSV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00699 579 SMART VWA_4 341 538 IPR002035 -
Viun3g00699 579 ProSiteProfiles C2 domain profile. 177 302 IPR000008 -
Viun3g00699 579 PANTHER COPINE 32 578 IPR045052 GO:0005544
Viun3g00699 579 ProSiteProfiles C2 domain profile. 28 164 IPR000008 -
Viun3g00699 579 Pfam C2 domain 54 153 IPR000008 -
Viun3g00699 579 Pfam C2 domain 199 290 IPR000008 -
Viun3g00699 579 SUPERFAMILY vWA-like 341 525 IPR036465 -
Viun3g00699 579 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Viun3g00699 579 CDD C2A_Copine 47 166 - -
Viun3g00699 579 FunFam Protein BONZAI 1 51 194 - -
Viun3g00699 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 50 165 IPR035892 -
Viun3g00699 579 CDD C2B_Copine 195 290 IPR037768 -
Viun3g00699 579 Pfam Copine 362 577 IPR010734 -
Viun3g00699 579 Gene3D C2 domain 52 197 IPR035892 -
Viun3g00699 579 FunFam Protein BONZAI 1 isoform A 195 314 - -
Viun3g00699 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 290 IPR035892 -
Viun3g00699 579 CDD vWA_copine_like 312 566 IPR010734 -
Viun3g00699 579 Gene3D C2 domain 198 325 IPR035892 -
Viun3g00699 579 SMART C2_3c 198 297 IPR000008 -
Viun3g00699 579 SMART C2_3c 48 161 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00699 Viun-Chr3 4331357 4340341 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00699 - - vra:106768925 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00699 3 4331357 4340341 Viun9g01592 9 23585170 23593947 PCT