LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g00645	ATGTCTTCTGAAACCCTAGAAAACGAGAAGCCTCAAGGGGAAGAAGAAGTCCAAGCTGAAGAAAATCACACCGAACAAGAAGATACTCCGGTGAAGAACGATGTGAATGAAAACGGCGACGGAAAAGAAAAGGATCGGGTAGAAGAAGAGAAAAATGAAGAGGAAGAAGAAGAGACTGATGAGCGTGGCGAAGCGAAGTCAATTAAGTCAACAGAAGAAAGCGGTTACGCTACGCCAACTAGTAAGAGACCAACCAGGGAGAGGAAAACGGTGGATAGGTACACTGTTTCTTCACCCGATAAGTTTCACCAGTCTTCCTCTCGCAAAACCTCGTCAATTGAGAAGGGCAACGGTACGCAGCTCAAGGACATTCCAAATGTGGCTTTCATGTTATCAAAGAGAAAAACTGATGACAACCTACATGCGCTTCACAGAGTACTCTTTGGGCTAAGGGGAAAGGTAAACGCAGTAAAGAGAAATATAGGAATGTTTTCTGGCTATGTGTGGACTGACAACGAGGAAAAACAAAAGGCAAAGACAAGGGAGAAGATTGAGAAGTGTCCGAAAGAGAAGTTGGTGGACTTCTGTAATGTGCTTAATATTCCAATAAACAAGACCACTATGAAGAAGGAGGAACTGTGTGCGAAGCTGTTTGAATTTTTGGTTTCTCCGCATGCTACAACTGATGTTCTTCTTGCCGACCAAAAAATGAAAGGGAAAAAGCGAAGCAGAAAGCAAACCCCAAACAAATCCGAAGCATCTGCCAAGAAGCAAAAGAAAAGCTCACTAGTTGCGAAAAAGCAAAAACAGTCTTCTGATATCGAGGAGAGTGATGTCTCTGAACCTTCCGAGGCAAAAGTTGATACTGAGGAAGATGATGTGCAAAAAAGTGAAAGTGATCCGGATGACGAAAACTTGTCAGAGAAAGAGGAAGATGATAAAGAAAAGGCTCACAATCGGTCTTCGAAGAAGATTCTGAATGAAGACCAAGACGAACCTGTAAAGAAGACCACTACAGTAGAGACAGGCAAGAGCAACGAAAGAACTCCCAAAAAATCTACTTCAAAAATAGCTCGTAATGACAATACTTCGAAATCCAAGCAGTCTGCTTCCAAGAAACAGAAAACAGTAAGGGAAAACCAGAATTCAAAAGGGAAGGGTGCAGACAAAAAACCAACCGACAAGTCTTCAAAGGCTTTAGTTAAGGATGAAGGAAAAGGTAGAAGTAGCGAGAAAGCTAAATCCGGACCTAGTAAGGATGAAATGCATCGAGTGGTAGTTGATATTTTGAAGAAAGTAGATTTCAATACGGCAACTTTATCTGATATCCTGAAACGACTTGGTACACACTTTGACGTGGATTTGATGCATAGAAAAGCAGAGGTGAAGGATATAATTACAGATGTAATTAATAACATGTCGGATGACGATCAAGAGGAAGCATCAAATGTTGGAGATGATGATGGTGAAGACGAGACATTGTTGTAG	1488	0.416	MSSETLENEKPQGEEEVQAEENHTEQEDTPVKNDVNENGDGKEKDRVEEEKNEEEEEETDERGEAKSIKSTEESGYATPTSKRPTRERKTVDRYTVSSPDKFHQSSSRKTSSIEKGNGTQLKDIPNVAFMLSKRKTDDNLHALHRVLFGLRGKVNAVKRNIGMFSGYVWTDNEEKQKAKTREKIEKCPKEKLVDFCNVLNIPINKTTMKKEELCAKLFEFLVSPHATTDVLLADQKMKGKKRSRKQTPNKSEASAKKQKKSSLVAKKQKQSSDIEESDVSEPSEAKVDTEEDDVQKSESDPDDENLSEKEEDDKEKAHNRSSKKILNEDQDEPVKKTTTVETGKSNERTPKKSTSKIARNDNTSKSKQSASKKQKTVRENQNSKGKGADKKPTDKSSKALVKDEGKGRSSEKAKSGPSKDEMHRVVVDILKKVDFNTATLSDILKRLGTHFDVDLMHRKAEVKDIITDVINNMSDDDQEEASNVGDDDGEDETLL	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g00645	495	Pfam	DEK C terminal domain	417	469	IPR014876	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	310	355	-	-
	Viun3g00645	495	SUPERFAMILY	DEK C-terminal domain	411	471	-	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	366	423	-	-
	Viun3g00645	495	Gene3D	-	409	472	-	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	234	423	-	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	473	495	-	-
	Viun3g00645	495	Coils	Coil	44	64	-	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	82	96	-	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	269	293	-	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	294	309	-	-
	Viun3g00645	495	Coils	Coil	3	23	-	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	8	49	-	-
	Viun3g00645	495	PANTHER	DEK PROTEIN	9	486	IPR044198	GO:0003677\|GO:0006325
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	1	119	-	-
	Viun3g00645	495	FunFam	DEK domain-containing chromatin associated protein	408	472	-	-
	Viun3g00645	495	ProSiteProfiles	DEK C-terminal (DEK-C) domain profile.	416	471	IPR014876	-
	Viun3g00645	495	MobiDBLite	consensus disorder prediction	97	119	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g00645	Viun-Chr3	3958685	3962721	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g00645	K17046		-	gmx:100785644	645.966

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun3g00645	3	3958685	3962721	Viun3g00645	3	3958685	3962721	ECH