Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00643 ATGGCTTTCTTTCATGGAATGTTGAACGTTCTCGTTCCCGCTCTAAGCCTGGCTATTCTGCTACTCATTTTACCACCCTTTCTGTTATTCAAGATTCTCCGCTTCATCGTAAGATCAATTTCTAGAGAGGATGTAGCAGGAAAAGTGGTACTCATCACTGGAGCATCCTCGGGGATAGGCGAGCACCTTGCGTATGAGTATGCTAAAAGAGGGGCGCGTCTAGCACTTGTTGCCAGAAGAGAAAATCGAATCAAAGAAGTTGCCGGCAATGCCAAATTGCTTGGATCCCCAGATGTAATCACCATTCCTGCTGATGTTTCAAGACCCCAAGATTGCCAACGATTCGTTGACTCAACAATCAACCACTTTGGACGATTGGATCATTTGGTGAACAATGCTGGAATAAATGCTCTCAGCATGTTTGAGGACACCACTGATATCACTAACTTTGCACCCGTAATGGACATTAACTTCTGGGGTTCTGCGTATAGCACTTACTTTTCAATCCCCCACCTCAGACAAAGCAAAGGCAAGATCGTAGCGGTAGCTTCTTGTAATGGATGGTTGCCTGTTCCGAAGATGAGTATCTACAATGCCAGCAAAGCAGCAGTTATCAGCCTATATGAGACTCTGAGAACTGAATTGGGAAGAGACATAGGAATAACTATAGTCACTCCAGGACTGATAGAGTCAGAAATGTCTCAAGGGAAGATCCTATCCAACGATGGCAAGATGGTTTTTGATCAACAAATAAGAGATATGCATGTTGGTGTGATGCCCATAAGATCAGTGACAGAAGCTGCCAAAGCAATTGTGAATAGCGTTTGCCGTGGGGACTCCTACTTGACCGAACCAGCTTGGTTTACGACAACGTTCTATTGGCAGGTATGTTTCCCTGAAATGTTAGGGTTTTTTAACCGCTCATCACTAACTTCGGAGTCTTCTGAGGAGGATCCAGCTACCAGCAAGAAGGTCCTTGATCTTAAATTCTTGAAGAAATATATAAACCCCAAGTCAGTGAGGAGTCCCAATATCAAACCCAACTAA 1047 0.4413 MAFFHGMLNVLVPALSLAILLLILPPFLLFKILRFIVRSISREDVAGKVVLITGASSGIGEHLAYEYAKRGARLALVARRENRIKEVAGNAKLLGSPDVITIPADVSRPQDCQRFVDSTINHFGRLDHLVNNAGINALSMFEDTTDITNFAPVMDINFWGSAYSTYFSIPHLRQSKGKIVAVASCNGWLPVPKMSIYNASKAAVISLYETLRTELGRDIGITIVTPGLIESEMSQGKILSNDGKMVFDQQIRDMHVGVMPIRSVTEAAKAIVNSVCRGDSYLTEPAWFTTTFYWQVCFPEMLGFFNRSSLTSESSEEDPATSKKVLDLKFLKKYINPKSVRSPNIKPN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00643 348 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Viun3g00643 348 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Viun3g00643 348 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Viun3g00643 348 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Viun3g00643 348 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Viun3g00643 348 Gene3D - 34 315 - -
Viun3g00643 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Viun3g00643 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Viun3g00643 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Viun3g00643 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 304 IPR036291 -
Viun3g00643 348 Pfam short chain dehydrogenase 48 236 IPR002347 -
Viun3g00643 348 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Viun3g00643 348 PANTHER RETINOL DEHYDROGENASE-RELATED 46 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00643 Viun-Chr3 3946632 3948800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00643 43 234 Acyl Lipid Metabolism Gene Families AT1G24360 30.256 1.02e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00643 K22418 - gmx:100787835 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00643 3 3946632 3948800 Viun3g00643 3 3946632 3948800 ECH