Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00642 ATGGATGCAATTACCAAGCTTCTCGACTTTGCATTGCCCCCACTTTCTCTACTTCTCTTCACCATTCTAATGCCACCTTCCCTCATATTCAAGCTGCTTATGCACGTAAGAAAATCTCTGCGCAAAGAAAACGTCGCAAACAAAGTCGTATTAATCACCGGAGCAGCCTCAGGAATTGGCGAGCAAATAGCTTATGAATATGCAAGGCGAGGAGCAAAGCTTTCTCTGGTTGATATCAGAAAGGAGAACCTTGCGGCGGTGAGTGATAAAGCACGATCTCTGGGTTCTCCTGATGTTACCATCATTGGTGCTGATGTATCCAAGCCCCATGATTGCAAACGCTTTGTTGATGAAACGGTCAACTACTTCGGAAGACTGGATCATCTGGTAAATAATGCAGGAATCAGTGGTAGACCTGTAACTGTGGAGAATATGCGTGATGTTTCTGAATATACTGCAGTTATGGATGTAAATTTTTGGGGAGCAGTTAATGCGACGATATATGCAATCCCACATCTGAAAATAAGCAAAGGGAGGGTCATAGTGATTGCTTCGGTTTGCGCATGGTTCCCACTACCGCTGATAAGTATCTATAATGCGAGCAAAGGAGCGATAGTAAACTTCTTCGAGACTCTGAGAATGGAAGCTGGCAGTGGTATCGGCATAACAATTGCGACGCCCGGTCTTGTGAAGACAGAACTTACATTAAGGGCGAAATGTGAGTTCCAGGATGCTATGAGAAGAGTTCGAATGGGATCAGCTAGTGAATGTGGAAAAGCCATTGTTGAAAGTGCATGCAGGGGAGATATGTATGTTACAGATCCATCGTGGCCCAAAGCCTTGTTTCCTTGGAAAGTCTTTCATCCTCAATTCGTAGATTGGGCCTGCAACCTCATCTGTGCACCTTCTTCAAACAAATCTGCCATCAAAACCAATCTCGTGATGCCACAGCATAAGGCAGAATAA 966 0.4451 MDAITKLLDFALPPLSLLLFTILMPPSLIFKLLMHVRKSLRKENVANKVVLITGAASGIGEQIAYEYARRGAKLSLVDIRKENLAAVSDKARSLGSPDVTIIGADVSKPHDCKRFVDETVNYFGRLDHLVNNAGISGRPVTVENMRDVSEYTAVMDVNFWGAVNATIYAIPHLKISKGRVIVIASVCAWFPLPLISIYNASKGAIVNFFETLRMEAGSGIGITIATPGLVKTELTLRAKCEFQDAMRRVRMGSASECGKAIVESACRGDMYVTDPSWPKALFPWKVFHPQFVDWACNLICAPSSNKSAIKTNLVMPQHKAE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00642 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 296 IPR036291 -
Viun3g00642 321 Gene3D - 31 304 - -
Viun3g00642 321 PANTHER RETINOL DEHYDROGENASE-RELATED 46 300 - -
Viun3g00642 321 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
Viun3g00642 321 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Viun3g00642 321 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Viun3g00642 321 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Viun3g00642 321 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Viun3g00642 321 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Viun3g00642 321 Pfam short chain dehydrogenase 48 235 IPR002347 -
Viun3g00642 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Viun3g00642 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Viun3g00642 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00642 Viun-Chr3 3941145 3944298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00642 43 253 Acyl Lipid Metabolism Gene Families AT1G24360 29.767 1.69e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00642 K22418 - gmx:100808990 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00642 3 3941145 3944298 Viun3g00642 3 3941145 3944298 ECH