Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00603 ATGGCTAAGGTTTACCCTCAGTTACCCACTTCTCCTCAGAATCAGTGTCTCACATCCAAAAGAGAAACCTACACTCTATGGTTGAAATCACTCGTCTTCCACTCCAATGGATGCACTGTCTATGACTCAAATGGTGACATCGTTTACAGAGTTGACAACTATGACAGAAAGGGTAGAAGAGAAGTTAATCTCATGGATCTACGAGGCAAAGTTCTCTGCACCATAAAGAAGAGATTACTAGCTCTTGGATGTTGGGAAGGACACAGATGCATCAGTTCAGATTTTGGCACCCAGGAACAACCATGGTTCCAAGTAAAAAGATGTAACCAAATGATGAAAGGGAAAGTAGCTTGCCAAATTTCTGTGGGGTGCCAGAAATACAGCATAGTAAGAATCAGTGGCAAAGCAGAAGCATTTAGGATCGTGAACATTGATGGACAAATTGTTGCCGAGGCAAAGCAGAAACACTCACCCTCAGGTGTTGTACTGAGCAACGATGTTCTAACGTTGGATTTGGCTGCTGGCACAGATCATTCTCTCATAATGGCTTTAATCACAGTATATGGGTTGATATGCGGTATAATGTAA 588 0.4235 MAKVYPQLPTSPQNQCLTSKRETYTLWLKSLVFHSNGCTVYDSNGDIVYRVDNYDRKGRREVNLMDLRGKVLCTIKKRLLALGCWEGHRCISSDFGTQEQPWFQVKRCNQMMKGKVACQISVGCQKYSIVRISGKAEAFRIVNIDGQIVAEAKQKHSPSGVVLSNDVLTLDLAAGTDHSLIMALITVYGLICGIM 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00603 195 PANTHER - 22 192 IPR007612 -
Viun3g00603 195 Gene3D - 13 193 IPR038595 -
Viun3g00603 195 SUPERFAMILY Tubby C-terminal domain-like 13 192 IPR025659 -
Viun3g00603 195 Pfam LURP-one-related 12 187 IPR007612 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00603 Viun-Chr3 3706739 3707877 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00603 - - pvu:PHAVU_002G287800g 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00603 3 3706739 3707877 Viun3g00603 3 3706739 3707877 ECH
Viun2g02564 2 31721825 31722793 Viun3g00603 3 3706739 3707877 PCT