Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00571 ATGGCGTTATCATTTCTTCGTGTTTCGCACTTGCTTTCTCCAACTCCTACACCTGCAACTGCAACTACTGCAACTACTGCAACTACTACAACATCCACTGTAGTGAAGTTCCAACACTTTCGGAGACCTTCTAACTTCGCGCTCTTCTTTCGCTCTTCAATTTTATGTCCCTTGGTTAGGGCCATTGGGCCTGATGGGAGGTTCTACCCAAGCCCAGGTGACGACGACCCACCGGAGGCTGCCGAGGACTCCTCCCATGGCTTCTCCACCTTCCAACAAATTCAGAACCAAGCGGAACGCGCGCGCCAGATCGAAGAGGAAGACTACAAGAACAACCAGGCCACGTACCTCGCCGCCATCGCCGACGTTGAAGATGCCCCCGATAACGTCGACTTCGACACCTCTGGCGACGACCTCTTCGGCGATATCGACAAAGCCATCGCGCTCAAGCGCAAGGAGTTCGTCTCCCAAGGCCTTCTCGAGCCGAACCCCCCCAAACAAGACCAGCTTGCCGCCGTGGATGAACTTCAGGCGGAGGAGCTCGGCGATTTGGAGGAAATTGAACGGCTCCAGGGGCTCACCGGTAATGGTAATGGTAACGGAAGCTTGAGTGAATCTCCGTTTGAATTGGATTTTGACAGTTACGGGAAAAGTAAGGTTAGGATTGTAGACGGAAAGTTTAAGATGAGTTTGGCTGAGCTTTTGGACGAGAGTAAGGTCGTGCCGGTGTCGGTTTCCGGTGATTTGGAAGTCGAAATCACCGGAATTCAGCACGATTCGCGGATTGTTAATTCTGGTGACTTGTTTGTGTGTTGCGTTGGGCGTAAAACGGACGGACATTTGTTTCTTTCTGAGGCTGATAAGAGAGGTGCGGTTGCGGTTGTCGCTAGTAAAGAGGTTGATATTGAGGATACTTTGGGGTGTAAGGCTCTGGTTATTGTGGAAGATACTAATGCTGTTCTTCCTGCTCTGGCTGCGTCGTTTTATAAACATCCTTCCACTAAAATGGCCGTGATTGGGATAACTGGGACTTATGGAAAAACGACCGCCACTTGTTTGATTAAAAGTTTGTATGAATCCATGGGACTACGTACTGGGATGTTGAACTCGGTTGCCTCTTTTGTCCACGGGGATAATAAGTTGGAGTTGGGTAGCGCGGCGTTGGATGCTGTTTTGGTTCAGAATTTGATGGCGAAGATGATTCACAACGGGACTGAGGCGGTGGTCATGGAGGCTGGTTCTCATGGGCTGGGGGAGGGGAAGTATGATGAGGTTGATTTTGATATCGCTGTTTTCACTAACTTGAGTCAGGACAAGGAGGGCGACAGAGATGCGCAGGCTAAGTTGTTCTCGAGAATGGTGGATCCTGAGAGGCATAGGAAGGTTGTTAACATTGATGATCCGAACGCGCCCTTTTTTGTGTCGCAGGGGAGCCAGGAGGTTCCTGTTGTGACGTTTGCGATGGAGAATAAGGATGCAGATGTTCATCCGTTGAAGTTTGAACTTTCTTTGTTTGAGACTCAGGTGTTGGTTAATACTCCCACAGGGATACTGGAGATTTCTTCAGGTTTGCTTGGGAAGCATAATATTTACAACATTCTTGCGGCTGTAGCGGTTGGGATTGCTGTTGGGGCGCCCTTAGAGGACATTGTTAAAGGAATTGAAGAGGTTGATGCGGTTCCTGGGAGGTGTGAATTGATTGATGAGGAACAGGCGTTTGGGGTGATAGTGGACCATGCCAGTACTCCTGATTCATTGTCTAGATTGCTTGATTCTGTAAGAGAGCTAGGACCTCGCAGGATCATAACTGTCATTGGATGCTGTGGTGAGGGTGACAGGGGTAAGAGACCTGCGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAAAATGAGGACCCTTTGGACATATTGGATGATATGTTATCTGGGGTAGGATGGTCAATGCAAGACTACCTCAAATATGGAGAAAATGACTATTATCCACCTCTTCCAAATGGTCATAGACTTTTTCTCCATGACATTAGGAGAGTAGCTGTGCGAGCTGCGGTTGCAATGGGAGAGGAGGGCGATGTGGTTGTGGTTACTGGCAAAGGCCATGAAGCATATCAAATAGAAGGTGATAAGAAGGAGTTTTTTGACGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGAGGTTACCAGAGAGCCATTGA 2268 0.485 MALSFLRVSHLLSPTPTPATATTATTATTTTSTVVKFQHFRRPSNFALFFRSSILCPLVRAIGPDGRFYPSPGDDDPPEAAEDSSHGFSTFQQIQNQAERARQIEEEDYKNNQATYLAAIADVEDAPDNVDFDTSGDDLFGDIDKAIALKRKEFVSQGLLEPNPPKQDQLAAVDELQAEELGDLEEIERLQGLTGNGNGNGSLSESPFELDFDSYGKSKVRIVDGKFKMSLAELLDESKVVPVSVSGDLEVEITGIQHDSRIVNSGDLFVCCVGRKTDGHLFLSEADKRGAVAVVASKEVDIEDTLGCKALVIVEDTNAVLPALAASFYKHPSTKMAVIGITGTYGKTTATCLIKSLYESMGLRTGMLNSVASFVHGDNKLELGSAALDAVLVQNLMAKMIHNGTEAVVMEAGSHGLGEGKYDEVDFDIAVFTNLSQDKEGDRDAQAKLFSRMVDPERHRKVVNIDDPNAPFFVSQGSQEVPVVTFAMENKDADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVKGIEEVDAVPGRCELIDEEQAFGVIVDHASTPDSLSRLLDSVRELGPRRIITVIGCCGEGDRGKRPAMTKIATDKSEVTMLTSDNPKNEDPLDILDDMLSGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVTGKGHEAYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00571 755 SUPERFAMILY MurE/MurF N-terminal domain 229 332 IPR035911 -
Viun3g00571 755 Pfam Mur ligase family, glutamate ligase domain 560 643 IPR004101 GO:0009058|GO:0016881
Viun3g00571 755 Gene3D - 332 563 IPR036565 GO:0005524|GO:0009058
Viun3g00571 755 MobiDBLite consensus disorder prediction 67 87 - -
Viun3g00571 755 PANTHER MUR LIGASE FAMILY MEMBER 184 741 - -
Viun3g00571 755 Pfam Mur ligase family, catalytic domain 252 329 IPR000713 GO:0009058|GO:0016881
Viun3g00571 755 Gene3D - 565 742 IPR036615 GO:0009058|GO:0016881
Viun3g00571 755 Pfam Mur ligase middle domain 341 539 IPR013221 GO:0005524|GO:0009058|GO:0016881
Viun3g00571 755 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 560 732 IPR036615 GO:0009058|GO:0016881
Viun3g00571 755 Gene3D - 230 330 - -
Viun3g00571 755 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 565 738 - -
Viun3g00571 755 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 251 732 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Viun3g00571 755 SUPERFAMILY MurD-like peptide ligases, catalytic domain 312 571 IPR036565 GO:0005524|GO:0009058
Viun3g00571 755 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 229 731 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00571 - - gmx:100776096 1273.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00571 3 3529222 3533201 Viun3g00571 3 3529222 3533201 ECH