Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00569 ATGTGGTTTCTCGGTTGGAAAGGGGCGTCGGGGTTCTCAGCCACTTCCACAGCCGAACAAGTCACTCAAGGGATTGATGGAACCGCTCTCACCGCCATTGTCACAGGAGCATCAAGTGGTCTTGGCCTGGAGACCACCCGGGTTCTTGCATCCCGCGGTGTTCATGTTGTCATGGCAGTAAGGAATGTGGACAGTGGTAATAATGTCAAAGAAACTGTTCTTGAGGAAACTCCCTCGGCTAAAATCGATGTTATGGAGTTAGATCTAAGCTCTTTGGCATCGGTGAGGAAATTTGCAGCAGATTTTAAGTCATCTGGTCTTTCACTCAATATTCTAATTAACAATGCAGGGGTGATGGCAACTCCATTCATGCTTTCCCAAGACAATATTGAATTGCAGTTTGCGACCAATCATTTAGGTCATTTTCTCTTGACAAACCTTTTATTAGAAACAATGAAAAAAACAGTACGAGAATGCAAACAGGAAGGAAGGATAGTTATTCTATCATCAGAGGCACACAGATTTGCATACCGTGAAGGAATTTTGTTTGATATGATCAATGATGAATCAGGGTACAACAGTTATTTCGCTTATGGACAATCAAAACTTGCTAACATTCTGCATGCAAAGGAGCTTGCAAGGCGCTTGAAGGAAGAAGGAGTGGAAATAACTGTCAACTCCCTTCATCCTGGATCAATTGTTACAAATATTCTGCGATACCATGGCTATGTTAATGTCCTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTTGAACAGGGAGCTGCAACTCAGTGTTACGTGGCATTGCATCCACAAGTGAAGGGAGTATCTGGTGAATACTTTATGGATTGCAATAAGGGCGACCCAACCTCTCTGGCTAAAGATTCAGAGCTGGCAAAAAAACTATGGGAATTCAGCTCAAGTCTGACTAATGCAAAGTAG 948 0.4283 MWFLGWKGASGFSATSTAEQVTQGIDGTALTAIVTGASSGLGLETTRVLASRGVHVVMAVRNVDSGNNVKETVLEETPSAKIDVMELDLSSLASVRKFAADFKSSGLSLNILINNAGVMATPFMLSQDNIELQFATNHLGHFLLTNLLLETMKKTVRECKQEGRIVILSSEAHRFAYREGILFDMINDESGYNSYFAYGQSKLANILHAKELARRLKEEGVEITVNSLHPGSIVTNILRYHGYVNVLANMVGKYFLKNVEQGAATQCYVALHPQVKGVSGEYFMDCNKGDPTSLAKDSELAKKLWEFSSSLTNAK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00569 315 Pfam short chain dehydrogenase 31 177 IPR002347 -
Viun3g00569 315 CDD retinol-DH_like_SDR_c_like 31 305 - -
Viun3g00569 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Viun3g00569 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Viun3g00569 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Viun3g00569 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Viun3g00569 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Viun3g00569 315 Gene3D - 25 315 - -
Viun3g00569 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 287 IPR036291 -
Viun3g00569 315 PANTHER RETINOL DEHYDROGENASE 10 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00569 Viun-Chr3 3511563 3514579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00569 33 285 Acyl Lipid Metabolism Gene Families AT3G55290 27.652 3.42e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00569 - K19329 gmx:121174911 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00569 3 3511563 3514579 Viun3g00569 3 3511563 3514579 ECH