Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00565 ATGCCACCTTTTGCAGGTTCTGAACCAGCTGGCTTCCCCAAGCCCGATTCCAACATAGTTTCCATCGATGTCGGAGGCCAAGTATTCCAAACTACCAAACAGACACTAACCTCGGCGGGTCCCAAAACCTTCTTCTCCAGAATTGCGGAGTCTTCTGGAATCTACACGCCGTTCATAGACAGAGACCCGGAAATGTTCTCGCTCCTCCTCTCTCTCCTCCGCACCGGAAACCTTCCCTCAAAGGCCAAAGCTTTCGATCTCCAAGACCTAATTATTGAGTCAAAATTCTACGGCATCGAAACCCTCCTCATCAATTCCCTCTCCAACTCTTCTCAATTGGAACCCTTCAACCTCCAAAAATCCCTCCTTTTGCCCCTCAACGGCCGCGACTCCCCCTCCGCCCTCGCCGCCGACGCAGCCTGCGGTGCCCTCCACGTCGCGCACGGCAGCAAGATCACCTCCTTCGACTGGTCCCTCCGCCGCAAGGCCACCGTCCTCACCCACTTCACCGCCGTGGACTCCCTCCTCGCGCTCTCGCCGACTCTGGTTGCCGCCGGAGCCAACGACTTCTCCGGCCTCCAGATCCTGGACCTCGAGAACGGCCGCGTCAGGGAAACCCTAAACTGGGAAAACGTCACGAAATCCGGGTCCACCGTCCAAGCCATCGGAGCCTCCTCGGAAAACATGTTCGTGAGCTTCGAATCCTCGCGCCGAAACTCCAATTCCATAATGGTTTACGATTTGCATTCTCTAACCCCCATCACCGAGATCGGTCACAACGAAATCTTCGGCGCAGACATCGATTCGGCAATTCCCGCGACGAAGTTACAGTGGATTGAGGGTTACAATCTGTTGATGGCCTCTGGGTCCCACAGTGGTCCCTCCGGCGTTTCCGGTAACATACGGTTGTGGGATGTTCGATCCGGAAACGTTGTGTGGGAAATTTCCGAGAAGGTGGATTGTTTTGCTGACGTGGCGGTTTGCGATCCGTTGTCGGTAATTTTTAAGGTTGGGGTGAATTCTGGCGAAGCTTCTTACGTGGACATGCGGAATTTGAGCACTGAGAGCGCGTGGGTTTGTCTCGGGGATAAAAGGAAGGTTACGAACAATGGGAAGAAGGAAGGGATTGGGTGCAAAATCGAAACGCAGGGGAATCAAGTGTTTTGCACGAAGGGTGGTGACGTGGAGCTCTGGTCTGAGGTTGTCATGGGTGGTGGCAATGGTGGGAGAATCTTCAAGAAGAACTTGATGGGTAGAATGAGAGACATGGGTGGTGCAAAGATCACAAATTTGGCCTTTGGAGGAAGCACCATGTTCTTAACCAGGAAGGATCAGCAATGTGTTGAGGTGTGGCAGAGTTCTTCAAGGGAATTTTGA 1377 0.5352 MPPFAGSEPAGFPKPDSNIVSIDVGGQVFQTTKQTLTSAGPKTFFSRIAESSGIYTPFIDRDPEMFSLLLSLLRTGNLPSKAKAFDLQDLIIESKFYGIETLLINSLSNSSQLEPFNLQKSLLLPLNGRDSPSALAADAACGALHVAHGSKITSFDWSLRRKATVLTHFTAVDSLLALSPTLVAAGANDFSGLQILDLENGRVRETLNWENVTKSGSTVQAIGASSENMFVSFESSRRNSNSIMVYDLHSLTPITEIGHNEIFGADIDSAIPATKLQWIEGYNLLMASGSHSGPSGVSGNIRLWDVRSGNVVWEISEKVDCFADVAVCDPLSVIFKVGVNSGEASYVDMRNLSTESAWVCLGDKRKVTNNGKKEGIGCKIETQGNQVFCTKGGDVELWSEVVMGGGNGGRIFKKNLMGRMRDMGGAKITNLAFGGSTMFLTRKDQQCVEVWQSSSREF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00565 458 Gene3D Potassium Channel Kv1.1; Chain A 12 116 IPR011333 -
Viun3g00565 458 SMART BTB_4 18 114 IPR000210 GO:0005515
Viun3g00565 458 SUPERFAMILY WD40 repeat-like 147 351 IPR036322 GO:0005515
Viun3g00565 458 Gene3D - 136 458 IPR015943 GO:0005515
Viun3g00565 458 SUPERFAMILY POZ domain 17 104 IPR011333 -
Viun3g00565 458 CDD BTB_POZ_KCTD-like 20 97 - -
Viun3g00565 458 Pfam BTB/POZ domain 20 106 IPR003131 GO:0051260
Viun3g00565 458 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 14 455 IPR045068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00565 Viun-Chr3 3470964 3472808 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00565 - - gmx:100792189 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00565 3 3470964 3472808 Viun3g00565 3 3470964 3472808 ECH