Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00556 ATGTCTTCCCCTAGCAAACGGAGAGACATGGACCTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATCAACGATGACATGCAAGAATTCTTTGTGGAATTCCACGGACCTAAAGAGAGTCTGTACGAGGTCGGTGTTTGGAAGGTAAAGGTTGAACTACCTGATGCTTATCCTTACAAGTCTCCTTCTATTGGCTTTGTCAACAAAATTTTTCATCCTAATGTTGATGAATTGTCTGGTTCTGTATGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTTTGATCCATTAAATGGTGATGCTGCTGCCTTGATGATCCGAGATCATGCTACATATGAACAGAGAGTTAAAGAATATTGTGAGAAATATGCGAAGCCAGAAGACATTGGAGCTGTAGAGGAGAAAGATTCTAGCGAAGATGAGCTGAGTGAAGATGGTTATGCCTCTAGTGATGATGCCATTGTTGGCCAACCAGATCCTTAG 492 0.4187 MSSPSKRRDMDLMKLMMSDYKVEMINDDMQEFFVEFHGPKESLYEVGVWKVKVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFDPLNGDAAALMIRDHATYEQRVKEYCEKYAKPEDIGAVEEKDSSEDELSEDGYASSDDAIVGQPDP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00556 163 MobiDBLite consensus disorder prediction 136 150 - -
Viun3g00556 163 Pfam Ubiquitin-conjugating enzyme 11 98 IPR000608 -
Viun3g00556 163 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Viun3g00556 163 SUPERFAMILY UBC-like 4 128 IPR016135 -
Viun3g00556 163 CDD UBCc 10 123 IPR000608 -
Viun3g00556 163 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 152 IPR000608 -
Viun3g00556 163 SMART ubc_7 4 128 - -
Viun3g00556 163 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 28 98 - -
Viun3g00556 163 Gene3D Ubiquitin Conjugating Enzyme 6 129 IPR016135 -
Viun3g00556 163 MobiDBLite consensus disorder prediction 131 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00556 Viun-Chr3 3427902 3430759 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00556 K10576 - gmx:100791133 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00556 3 3427902 3430759 Viun3g00556 3 3427902 3430759 ECH