Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00550 ATGGGATACGGTGAAAAAGGAGGAAGACCTCCGTTCAAAAAGTTCAAGGCCTCTTCTAAATTCCAGGATGATCCTCGAAAAGGATTTGTTGAAGATGAAGAGATATATGGCGGCGATGATGCATACGACGATGACGAAGGGAAAACCAAGGATTTTAGCAAATTGGAGCTGAAACAGGATCACACCAATCGCCCTCTGTGGGCTTGCGGCAATGGCCGCATATTCCTCGAGACTTTCTCGCCTTTGTACAAACAAGCTTATGATTTTCTCATCGCAATCGCTGAGCCTGTTTGCAGGCCGGAGTCTATGCACGAGTACAACCTTACTCCACACTCGCTGTATGCGGCTGTTTCTGTTGGTCTGGAAACTGAAACAGTTATAAGTGTTTTGAACAAGTTATCCAAGACCAAGCTTCCCAAAGAGATGATTAAATTTATACATGATTCTACTGCAAATTATGGCAAGGTGAAACTCGTGCTCAAGAAGAATCGCTACTTTATTGAATCTCCATTTCCAGAGGTATTGAAGACATTGCTCAGGGATGACACTATATCTCGAGCAAGGATTATTTCAGAGAATGTAAATGGAGATGGATTTACAATAAGCAAAGCAGCAGGTGAAATTGAAGGCACTCATGATGAATTGCTAAACGAAGCAGAAGTGGCAGCGGCTGCAGAAGAGAAAGAAACACATTCATTTGAAATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGTTGCTTGCCAAATGCATTAAATTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACGGTGAACCCAGACCTTGACATGGAACTAAAGCCTCAAGCACAACCACGGCCTTATCAAGAGAAGAGTCTCAGTAAAATGTTTGGAAACGGCAGAGCAAGGTCTGGTATAATAGTTCTACCTTGTGGTGCTGGAAAGTCCCTAGTTGGTGTTTCTGCAGCTTGCCGTATAAAAAAGAGCTGCCTTTGTTTGGCAACAAATGCTGTTTCCGTAGATCAGTGGGCTTTTCAATTTAAACTTTGGTCAACTATCCGAGAAGAAAACATATGTCGATTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTCGTGACAACATATAATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATACGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTGCACGTGGTTCCAGCCCACATGTTTCGAAAAGTTATTAGTATCACTAAATCTCACTGTAAACTTGGGCTCACAGCTACACTTGTCAGAGAGGACGAAAGGATTACAGATCTAAACTTCCTGATTGGTCCCAAGCTGTACGAGGCAAATTGGTTAGATCTAGTAAAAGGTGGATTCATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTTGCCGAGTATTTGAAGAAAGAAAACTCCAAGAAGAGGCAGGCACTTTATGTGATGAATCCTAATAAGTTCCGAGCGTGCGAGTTTCTCATAAATTACCATGAAAGGGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTGTTTGCTCTCACTGAGTATGCCATGAAACTTCGCAAACCAATGATCTATGGTGCTACAAGCCATGTAGAGAGGACAAAAATTTTACAAGCGTTCAAAACTAGCAAAGATGTAAATACCATATTTCTTTCGAAGGTGGGTGATAACTCAATCGATATTCCTGAAGCAAATGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGAGACAAGAAGCCCAGCGTCTGGGTCGTATTCTTAGGGCAAAGGGAAAGCTTCAAGATAGGATGGCTGGGGGTAAGGAGGAGTATAATGCTTTTTTTTATTCCCTTGTCTCAACTGATACCCAGGAGATGTATTACTCAACTAAGAGGCAACAATTTTTAATTGATCAGGGTTACAGTTTTAAGGTAATTACAAGCTTGCCTCCTGCTGATGAAGGTCCTAGTTTGAGCTATTATCATATTGAGGATCAATTGGCGCTTCTTGGAAAGGTTTTGAGTGCTGGTGATGATGCAGTTGGATTAGAACAACTGGAAGAAGATTCAGATGAAATAGCTCTTCACAATGCTCGCCGCACGCATGGATCCATGAGTGCAATGTCCGGTGCAAAAGGGATGGTTTATATGGAATACAGTACTGGGCGTAACAAAGGCCAAGGACAGATCAAGAGCAAGCCAAAAGATCCAGCGAAGAGACACTTCTTATTTAAAAGAAGATATGGCGCAACCTAA 2310 0.4169 MGYGEKGGRPPFKKFKASSKFQDDPRKGFVEDEEIYGGDDAYDDDEGKTKDFSKLELKQDHTNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETVISVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDDTISRARIISENVNGDGFTISKAAGEIEGTHDELLNEAEVAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREENICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADEGPSLSYYHIEDQLALLGKVLSAGDDAVGLEQLEEDSDEIALHNARRTHGSMSAMSGAKGMVYMEYSTGRNKGQGQIKSKPKDPAKRHFLFKRRYGAT 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00550 769 Gene3D - 463 703 IPR027417 -
Viun3g00550 769 SMART helicmild6 537 615 IPR001650 -
Viun3g00550 769 Gene3D - 271 462 IPR027417 -
Viun3g00550 769 CDD DEXHc_XPB 273 442 - -
Viun3g00550 769 FunFam Putative DNA repair helicase rad25 463 705 - -
Viun3g00550 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 454 IPR014001 -
Viun3g00550 769 FunFam Probable DNA repair helicase RAD25 271 462 - -
Viun3g00550 769 Pfam ERCC3/RAD25/XPB C-terminal helicase 462 710 IPR032438 -
Viun3g00550 769 PANTHER RAD25/XP-B DNA REPAIR HELICASE 55 737 - -
Viun3g00550 769 MobiDBLite consensus disorder prediction 1 44 - -
Viun3g00550 769 NCBIfam DNA repair helicase rad25 51 764 IPR001161 GO:0003678|GO:0006289|GO:0006367
Viun3g00550 769 CDD SF2_C_XPB 473 637 - -
Viun3g00550 769 Pfam Helicase conserved C-terminal domain 66 189 IPR032830 -
Viun3g00550 769 MobiDBLite consensus disorder prediction 9 34 - -
Viun3g00550 769 SMART ultradead3 277 458 IPR014001 -
Viun3g00550 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 456 IPR027417 -
Viun3g00550 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 675 IPR001650 -
Viun3g00550 769 Pfam Type III restriction enzyme, res subunit 280 436 IPR006935 GO:0003677|GO:0005524|GO:0016787
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 571 589 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 64 84 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 590 615 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 466 488 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 524 546 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 718 737 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 293 315 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 262 288 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 627 650 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 504 519 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 400 420 - -
Viun3g00550 769 PRINTS Xeroderma pigmentosum group B protein signature 150 169 - -
Viun3g00550 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 713 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00550 Viun-Chr3 3387532 3394897 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00550 K10843 - gmx:100789550 1424.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00550 3 3387532 3394897 Viun3g00550 3 3387532 3394897 ECH