Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00539 ATGGATGTGTTGTTGTTATTATGTGTTCTTCTGGTTGCTTTGCCAAACGTGGCTGTAGTGGAGAGTCGCAAAGCTCCAGTTTTGGACTACTTTGAGTATTGTGCTCTGAGCTGCAGAGCTTATAGTGCCTCATTGGAAGAATTTGGGGGTGTTGGTGATGGAACAACTTTGAACACCAGAGCTTTTCAGGCAGCCATAGATCATCTGAGTCAGTATGCATCTAGTGGAGGGTCTCAACTTTATGTTCCCCCAGGAAGATGGTTAACCGGCAGCTTCAATCTCACCAGCCATTTCACTTTATTCCTACACAAGGATGCTGTGATTCTTGCCTCTCAGGATGAAAATGACTGGCCAGTGATTGATCCCTTGCCATCTTACGGTAGAGGGAGGGACACCCAAGGTGGAAGGTTTAGCAGCCTAATTTTTGGGACCAACCTCACTGATGTTATCATAACTGGGAACAATGGCACATTGGATGGACAAGGTGATCTCTGGTGGCAAAAATTCCACAAGGGGGAGCTCAATTATACCAGGCCTTACCTGATTGAAATCATGTACTCAGATAATGTTCAGATATCCAATCTCACTCTGGTGAACTCTCCATCGTGGAATGTTCATCCTGTATACAGCAGCAACGTTGTTGTTCAAGGGATCACAATTCTGGCTCCTGTGACATCTCCAAATACAGATGGAATCAACCCTGACTCTTGCACAAACACAAGAATTGAAGACTGTTATATTGTGTCCGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACAAAGCAGCTTGTAATCAGAAGACTCACTTGCATTTCTCCATTCAGTGCTGTGATTGCTTTAGGGAGTGAGATGTCTGGTGGGATCCAAGATGTGAGGGCTGAGGACATTGTGGCCATAAATTCAGAATCAGGGGTTAGAATCAAAACTGCTGTGGGAAGAGGAGGGTATGTTAAGGACATATATGTTAGAAGAATGACCATGAAAACCATGAAATGGGCATTTTGGATGACAGGAAATTACGGGTCACATGCTGATGACAAGTATGATCCTAATGCTCTTCCTGTGATTCAGAACATAAACTATCGTGATATGGTTGCGGAGAATGTCACTATGGCTGCGAGGCTGGAGGGTATCTCTGGAGACCCTTTTACTGGAATCTGCATATCTAATGTAACAATTCAACTGGCAAAGAAGGCTAAAAAAGTTCCATGGACTTGCACTGATATTGATGGGATTTCAAGCGATGTCACTCCTGCACCATGTAATCTGTTGCCAGAACAAGGAGAAGAGAAGATTGGAGCATGTACCTTCCCAGAAGAAAGCTTGCCAATAGAAGATGTCCAGGTTCAAACGTGCACTTACAGTAGGAATTTATGA 1410 0.4418 MDVLLLLCVLLVALPNVAVVESRKAPVLDYFEYCALSCRAYSASLEEFGGVGDGTTLNTRAFQAAIDHLSQYASSGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGNNGTLDGQGDLWWQKFHKGELNYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPVYSSNVVVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHADDKYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIDGISSDVTPAPCNLLPEQGEEKIGACTFPEESLPIEDVQVQTCTYSRNL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00539 469 Pfam Glycosyl hydrolases family 28 136 412 IPR000743 GO:0004650|GO:0005975
Viun3g00539 469 Gene3D - 35 427 IPR012334 -
Viun3g00539 469 FunFam Glycoside hydrolase family 28 protein 29 426 - -
Viun3g00539 469 PANTHER PECTIN LYASE-RELATED 11 457 - -
Viun3g00539 469 SUPERFAMILY Pectin lyase-like 36 437 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00539 Viun-Chr3 3283672 3286143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00539 31 467 Glycoside Hydrolase AT4G23500 76.430 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00539 - - gmx:100785841 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00539 3 3283672 3286143 Viun3g00539 3 3283672 3286143 ECH