Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00533 ATGCCTTCTCCTTCAGCTCGTAGACTCACAATGGCCGCGATATCAAACTCATTATCACTCAAGCACGGTTTCTCTCTGGCGCGTCCGCAACGTCCTTTTCTCACTCCAGTTCCTCCTTCTTCCACTTCAATCAAATTCAGAAGATGCTACGCCGCTTTCGCCAATGAGAATCGCGAGTACGTGATCGTTGGCGGTGGAAATTCCGCGGGATATGCTGCACGCACTTTCGTCGAGCACGGCTTGGCGGATGGACGCCTTTGTATTGTGACCAAAGAGCCATATGCACCTTACGAGCGTCCTGCTCTGACGAAAGCGTATTTGTTCCCGCCGGATAAGAAACCAGCGCGTCTCCCTGGTTTTCACACGTGTGTTGGATCCGGTGGAGAGAGGCAGACTCCAGAGTGGTATAAAGAGAATGGGATAGAGATGTTGTATGAAGATCCAGTAAAGGATATTCATATTGAAAATCAAACTTTGACAACAAATTCTGGAAAAATTCTGAAGTATGGTTCGCTTATTATCGCAACAGGATGTACAGCATCAAGGTTTCCAGAGAAAATTGGGGGAAACCTACCTGGTGTTCACTATATCCGGAATGTTGCAGATGCTGATGCACTGATTTTATCATTAGGAAAAAGCAAAAAGGTTGTAGTTGTTGGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCTGCTGTTGGTTGGAATCTTGATACCACGATCATATTTCCGGAAGATCAACTTTTGCAAAGACTGTTTACTCCTTCTCTTTCCCGGAGATATGAAGAACTCTACCAAAAAAATGGAGTCAAAATCTTAAAGGGTGCCTCCATAAAAAATTTGGAAGCTGGTTCTAATGGACTTGTAGCTGGTGTGAAACTTGGAGATGGATCTGTGGTGGAAGCAGATACAGTTATCATAGGCATCGGAGCTAAACCTGCTGTCAGCCCCTTTGAGAGGGTGGGCCTAAATACAGATGTTGGTGGTATACAGGTTGATGGTTTGTTCCGGACAAGCATTCCAGGAATCTTTGCTGTTGGTGATGTAGCAGCTTTCCCTTTAAAGATTTATGACCGTATCTCTCGAGTGGAACATGTAGATCATGCTCGTCGCTCTGCACAGCACTGTGTGAAAGCATTACTCAGCGCACAAACTCAAACGTATGACTATCTTCCATACTTCTACTCGAGGATTTTTGAATATGAAGGAAGCCCTAGGAAAGTATGGTGGCAGTTCTTTGGAGACAATGTCGGAGAAACAGTTGAAGTTGGAAATTTTGATCCTAAAATAGCTACCTTCTGGATTGAATCTGGTAAGCTGAAAGGAGTTCTTCTTGAAAGTGGGAGCCCCGAGGAATTTCAACTCCTGCCTAAACTCGCCAGAAATCAACCTCTGATTGACAAAGCCAAACTTCAAAACGCAACTACAGTGGAGGAGGCTCTAGAGATTGCTCGGGCATCCTTACAAGGCAAAGCCGCTGTCTAA 1485 0.4512 MPSPSARRLTMAAISNSLSLKHGFSLARPQRPFLTPVPPSSTSIKFRRCYAAFANENREYVIVGGGNSAGYAARTFVEHGLADGRLCIVTKEPYAPYERPALTKAYLFPPDKKPARLPGFHTCVGSGGERQTPEWYKENGIEMLYEDPVKDIHIENQTLTTNSGKILKYGSLIIATGCTASRFPEKIGGNLPGVHYIRNVADADALILSLGKSKKVVVVGGGYIGMEVAAAAVGWNLDTTIIFPEDQLLQRLFTPSLSRRYEELYQKNGVKILKGASIKNLEAGSNGLVAGVKLGDGSVVEADTVIIGIGAKPAVSPFERVGLNTDVGGIQVDGLFRTSIPGIFAVGDVAAFPLKIYDRISRVEHVDHARRSAQHCVKALLSAQTQTYDYLPYFYSRIFEYEGSPRKVWWQFFGDNVGETVEVGNFDPKIATFWIESGKLKGVLLESGSPEEFQLLPKLARNQPLIDKAKLQNATTVEEALEIARASLQGKAAV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00533 494 Gene3D - 183 310 IPR036188 -
Viun3g00533 494 PRINTS FAD-dependent pyridine nucleotide reductase signature 328 350 - -
Viun3g00533 494 PRINTS FAD-dependent pyridine nucleotide reductase signature 215 233 - -
Viun3g00533 494 PRINTS FAD-dependent pyridine nucleotide reductase signature 169 187 - -
Viun3g00533 494 PRINTS FAD-dependent pyridine nucleotide reductase signature 302 318 - -
Viun3g00533 494 PRINTS FAD-dependent pyridine nucleotide reductase signature 61 80 - -
Viun3g00533 494 PANTHER APOPTOSIS-INDUCING FACTOR 1 58 479 - -
Viun3g00533 494 PRINTS Pyridine nucleotide disulphide reductase class-I signature 215 240 - -
Viun3g00533 494 PRINTS Pyridine nucleotide disulphide reductase class-I signature 343 350 - -
Viun3g00533 494 PRINTS Pyridine nucleotide disulphide reductase class-I signature 59 81 - -
Viun3g00533 494 PRINTS Pyridine nucleotide disulphide reductase class-I signature 303 317 - -
Viun3g00533 494 SUPERFAMILY FAD/NAD(P)-binding domain 54 380 IPR036188 -
Viun3g00533 494 Gene3D - 61 376 IPR036188 -
Viun3g00533 494 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 373 IPR023753 GO:0016491
Viun3g00533 494 Gene3D - 393 480 IPR016156 GO:0016491|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00533 Viun-Chr3 3240981 3248427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00533 166 370 Acyl Lipid Metabolism Gene Families AT1G48030 26.754 1.51e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00533 K08232 - gmx:100819919 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00533 3 3240981 3248427 Viun3g00533 3 3240981 3248427 ECH