Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00527 ATGAAGTGCAGATCGGTGGCGTGCATATGGTCCGGCACGCCGTTCCCTCACCGCGTCACCGCCGTCGCCGCTTTGACGGAACCACCGACGCCGACCTTTTACACAGCCGGATCGGATGGCTCCATCATCTGGTGGACCATCTCCAGTTCCACTTCCACACCGGAAGTTAAGGCGGTGGGCGTGTTGTGCGGTCACGGCGCACCGGTTACCGATCTCGCCGTCTGTAGGCCCATTGCAGATGCAGGAAACGGTTATACTTCGAGTACAAGTAAGTTCAATGCGTTGATAAGTGCGTGCTGTGATGGTTTTCTGTGTGTGTGGAGCAAAAACAGTGGCCATTGCCGGTGCCGGAGGAAATTGCCGCCTTGGGTTGGCACTCCTCGCTTAATTAGAACCTTGCCTTCGACACCGAGATATGTGTGTATAGCGTGTTCTTTAGAGGGGAATGAAGGATTAATTGATAGAGAAACTCAGCTTAGGAAGCCTCCTAAGTGCACTGTTCTTATTGTGGACTCGTATTCGCTTTCCATTACTCAAACTGTGTTTCATGGAAGTCTATCCATTGGTCCAATTAAGTTTATGGCATTGGTTTTGGGTGATGATGACGAGAAGAGAAACTCTGTGTTTGTAGCTGATTCGGATGGGAGGCAGCAGATGGTTCCCATATCAGAGGATCGAGGGGAGAACTTGGCGGGTTCACTTGGTGATAAAGGTCAATTGGAGACCTCTTTTTTCGATGAAGAATTGAGTAGTGTGGAGCAGGTTGTTTCGGTTTTAACCTATGGGAATGTTGTTGCTTCAATATTGGAAGATCGGTGTGTCTTCAGGTTACTGAATCATAGTGTGATTGGAGAAGTTTCTTTTGCGGATAGCTTATTCAGTTTGGATCAGGGTTGTACTCAAACACATGCTGATGGTGGCATTTTTCTTGAGAATGATGATGTGGAGAGTGTCTGCAATGGCAACGAATATGGAAACTCGATTACAGTAAGATTTGTTGTGTGGAATAATGTAGGTTATGCAGTTATATATAATGTATTGTATCAGAATGATGTTTTCCGATGTGAACCTCTTTCTGAGATTCCTGGTATTCGTTATCAACCTGATATGAGATTATCTGTTTTTTTTCAACAAGTAAGTCAATATCTTGTATGCATCAAGTCAATTTGCTATAATTATGAGGATCCTTTACTATGGAGGCCACTTGCCACAATGTGGTCATTGCATGATTTTAGTGATGAACCTGGTAGATTGTATCGTCAGTGCAGAATGATCGGTGATGGTGTATCTTTCACCGGCTGGTTTGAGAAATCGACTCAGCTCAAGGGATTCGATGGTCTTGAGACTAAAACTTTTGGTTTGAGTCCATATTCTGATATTGTTGACAACAAACATGCTGGTACTGGAACTAATTATTATGCTTACAAGGGGAAGGTTGTTTCTTCTTCCATGATCATCTCTGAGAACCTTTTCACTCCTTATGCTGTTGTATACGGTTTTTTAAGTGGAGAAATAGAGGTTGTAAGGTTTGATCTGTTTCAAGGGATTTGCTTGGATGATGCAAGTTCCAATCCTGATGAAAAGCCATCTGCATGCAAACAGTTTTTCTCAGGACATACAGGTGCTGTACTTTGTTTGGCAGCACATCAAATGATGGGTAGTGCCAAAAGCTGGAATTTTAAGCAGGTTTTGGTGTCTGGAAGTATGGATTGCACGATTCGAATATGGGATCTTGACACTGGCAGTCTTATCATGGTAATGCATCATCATGTAGCTCCTGTGCGTCAAATTATTCTTGCTCCACCTTTGACTGTGCATCCTTGGAGTAATTGTTTCCTTTCAGTAGGAGAGGATGCATGTGTTGCTCTTGTTTCTCTAGAGACTCTGCGAGTGGAGAGAATCTTTCCTGGACACGTGAACTATCCTTCTAAAGTTTTATGGGACGGAGCAAGAGGTTATATTTCCTGTCTCTGTCAAACACATTACGGAACTTCTGATGCTAATGATGTATTATACATTTGGGATGTAAAGACAGGTTCTCGTGAGCGAGTCCTACTTGGGACAGCTGCACATTCAATGTTTGATCATTTTTGTAAATGCGTCAGCAAGAATTCCGTATCTGGCACATTGCTGAATGGAAACACATCAGTCTCTTCCTTACTCCTTCCGATAGTTGATGATGCAAGGTTCTCTAACTCCCCCTTAAATAGTTCAGACAACTTGCTTACTTCATCAAGGTCGTCACCAAATATTTCAAATATGACTGAGCTGAATTCTTCCAACACAAATGCAGGTAAAGAAATTTCAGTGAAGCCAGATTCATCCTCTCAGATTGCTCTTTTGAGTAGCAAGCTTCCTATCAAATGCGCTTGCCCTTTCCCAGGGATTGTGTCTCTTTGTTTTGATCTTGCATCCTTGATGCTCTTATTTCAAAAGAATGAATCCATAGAAAATGGTGGTGGCAAGCCAGTGATTATCAATTTGAAGCAGCAGGGAGTCCAGGAGCAAAATCCCAGCCACCGTAATTCAGAAACTTTAGAAGGGCATGACTTGGTTAACCTGTTTGAAGAATACTTGCTTCGATATAGCTTGTCATATCTACATTCGTGGAGTGTAGACACAGAGCTTGATAATTTGTTGATAAGTGACATGAAGCTGAGGAGACCAGAAAATTTCATAGTAGCTTCTGGTCTGCAGGGGGATAAAGGGTCATTGACATTGACATTTCCTGCTCAGAGTGCTAATCTTGAGCTCTGGAAATCATCATCTGAGTTTTGTGCATTGAGATCATTGACGATGGTGTCCCTTGCCCAACGTCTGATTAGCTTGTCTCACTCTGGTTCAGCAGCCAGCAGTGCTTTAGCAGCCTTTTATACTCGGAATTTCCTGGAAAATTTTCCAGATGTGAAGCCACCTTCATTACAGCTCTTGGTGGCTTTTTGGCAAGATGAAAGTGAACATGTGCGTATGGCTGCACGCTCTATATTTCATTGTGCTGCCTCTCATGTTATTCCTCTACCTCTATGCAATTTGAAACCTACTGAGTCAAACAATATGAGTTTCCATACTGGAAGTAGAGACACGCATAATCTAGGAAACATGAGGGAAGGGAGTATATCTCCAAAGGTAGAAAAACAAGGAGTTTCCCGAGATGAGGAATCCAAGATACTTGCTTGGCTAGAATCATTTGAAGTGCAAGATTGGATTTCTTGTGTTGGTGGAACTAGTCAGGATGCAATGACATCTCACATTATTGTTGCTGGTGCACTGGCTATCTGGTATCCTAGTCTTGTAAAGCCAAGTCTTTCCAGGCTTGTTGTTCATCCATTAATGAAGTTGGCTATGGCTATGAACGAGAAGTATAGCTCCACTGCTGCTGAGCTACTTGCAGAGGGCATGGAAAGTACATGGAAAGAATGCATTGTCTCTGAGATTCCTCGTCTGATTGGGGATATTTTTTTCCAAGTAGAGTTGAGTGGCCCATCTTCCAAGTCAGTGAAAGAAATATCGGATGCATCTTTTTCTATTAAAAAGACATTGGTGGAGGTTCTTCTTCCAAGTTTGGCTATGGCTGATATAACAGGCTTTTTGGCTGTGATTGAAAGCCAAATTTGGTCTACTGCATCTGATTCACCTGTCCACATGGTGTCTTTGTTGACTCTCATAAGGATCATGCGTGGTTCTCCAAAGAATTTGGCTCAATACCTTGACAAGGTGGTCAACTTCATTTTACAGACTATAGATCCTAGCAACTCAGTCATGCGGAAGGCATGCTTCCAGAGTTCAATGACAACTTTCAAGGAACTTGTACGTGTATATCCCATGGTGGCTGTCACTGATTCATGGACCAAACTAGCAGTTGGAGATGTGATTGGAGAAGTTAACAACGCAAACATCAGGGTTTATGATATGCAAAGTGTGACAATGATAAAGGTTTTAGATGCAAGTGGGCCTCCTGGACTTCCAACTCTACTTCCAGCATCATCATTAGGAACAATGTTGACCACTGCTATTTCAGCACTGAGTTTTTCACCAGATGGAGAGGGGCTGGTTGCTTTTTCCGAACATGGACTACTGATTAGATGGTGGTCACTGGGATCTTTCTGGTGGGAGAAACTCAGCCGGAACTTTGTTCCTGTCCAGTGCACCAAACTAATATTTGTTCCTCCTTGGGAAGGATTTTCACCTAATTCTTCAAGATCAAGCATAATGGCCAATATTTTGGAAACTGACAGGCTGCAGAACTTTCAGGTGAGACTCTTTTAA 4266 0.4292 MKCRSVACIWSGTPFPHRVTAVAALTEPPTPTFYTAGSDGSIIWWTISSSTSTPEVKAVGVLCGHGAPVTDLAVCRPIADAGNGYTSSTSKFNALISACCDGFLCVWSKNSGHCRCRRKLPPWVGTPRLIRTLPSTPRYVCIACSLEGNEGLIDRETQLRKPPKCTVLIVDSYSLSITQTVFHGSLSIGPIKFMALVLGDDDEKRNSVFVADSDGRQQMVPISEDRGENLAGSLGDKGQLETSFFDEELSSVEQVVSVLTYGNVVASILEDRCVFRLLNHSVIGEVSFADSLFSLDQGCTQTHADGGIFLENDDVESVCNGNEYGNSITVRFVVWNNVGYAVIYNVLYQNDVFRCEPLSEIPGIRYQPDMRLSVFFQQVSQYLVCIKSICYNYEDPLLWRPLATMWSLHDFSDEPGRLYRQCRMIGDGVSFTGWFEKSTQLKGFDGLETKTFGLSPYSDIVDNKHAGTGTNYYAYKGKVVSSSMIISENLFTPYAVVYGFLSGEIEVVRFDLFQGICLDDASSNPDEKPSACKQFFSGHTGAVLCLAAHQMMGSAKSWNFKQVLVSGSMDCTIRIWDLDTGSLIMVMHHHVAPVRQIILAPPLTVHPWSNCFLSVGEDACVALVSLETLRVERIFPGHVNYPSKVLWDGARGYISCLCQTHYGTSDANDVLYIWDVKTGSRERVLLGTAAHSMFDHFCKCVSKNSVSGTLLNGNTSVSSLLLPIVDDARFSNSPLNSSDNLLTSSRSSPNISNMTELNSSNTNAGKEISVKPDSSSQIALLSSKLPIKCACPFPGIVSLCFDLASLMLLFQKNESIENGGGKPVIINLKQQGVQEQNPSHRNSETLEGHDLVNLFEEYLLRYSLSYLHSWSVDTELDNLLISDMKLRRPENFIVASGLQGDKGSLTLTFPAQSANLELWKSSSEFCALRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFLENFPDVKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHVIPLPLCNLKPTESNNMSFHTGSRDTHNLGNMREGSISPKVEKQGVSRDEESKILAWLESFEVQDWISCVGGTSQDAMTSHIIVAGALAIWYPSLVKPSLSRLVVHPLMKLAMAMNEKYSSTAAELLAEGMESTWKECIVSEIPRLIGDIFFQVELSGPSSKSVKEISDASFSIKKTLVEVLLPSLAMADITGFLAVIESQIWSTASDSPVHMVSLLTLIRIMRGSPKNLAQYLDKVVNFILQTIDPSNSVMRKACFQSSMTTFKELVRVYPMVAVTDSWTKLAVGDVIGEVNNANIRVYDMQSVTMIKVLDASGPPGLPTLLPASSLGTMLTTAISALSFSPDGEGLVAFSEHGLLIRWWSLGSFWWEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMANILETDRLQNFQVRLF 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00527 1421 MobiDBLite consensus disorder prediction 739 769 - -
Viun3g00527 1421 ProSitePatterns Trp-Asp (WD) repeats signature. 564 578 IPR019775 -
Viun3g00527 1421 Gene3D - 7 275 IPR015943 GO:0005515
Viun3g00527 1421 SUPERFAMILY ARM repeat 934 1292 IPR016024 -
Viun3g00527 1421 Gene3D - 514 784 IPR015943 GO:0005515
Viun3g00527 1421 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 537 588 - -
Viun3g00527 1421 MobiDBLite consensus disorder prediction 1023 1045 - -
Viun3g00527 1421 SUPERFAMILY WD40 repeat-like 18 687 IPR036322 GO:0005515
Viun3g00527 1421 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 586 IPR001680 GO:0005515
Viun3g00527 1421 Pfam WD domain, G-beta repeat 532 577 IPR001680 GO:0005515
Viun3g00527 1421 SMART WD40_4 5 46 IPR001680 GO:0005515
Viun3g00527 1421 SMART WD40_4 628 675 IPR001680 GO:0005515
Viun3g00527 1421 SMART WD40_4 580 625 IPR001680 GO:0005515
Viun3g00527 1421 SMART WD40_4 55 108 IPR001680 GO:0005515
Viun3g00527 1421 SMART WD40_4 529 577 IPR001680 GO:0005515
Viun3g00527 1421 SMART WD40_4 1326 1364 IPR001680 GO:0005515
Viun3g00527 1421 PANTHER RABCONNECTIN-3B, ISOFORM A 3 1412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00527 Viun-Chr3 3135217 3149005 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00527 K24738 - gmx:100818675 2427.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00527 3 3135217 3149005 Viun3g00527 3 3135217 3149005 ECH