Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00492 ATGTGGAAAGATAATTTTGACGGCATGGACGAAGAATTGGAGATTGGTGAGGGTGTGCAAGTGCAACATCAAAACAAAGATGATGGCTATTCACTAAATCCTGAATTCCCCGGAATATTAAAACCCCAAGAATATGATGAAATTCCAGAAGATAAGAATATGGCTGAAGGAAGGGAACATTTGCATCCAGGTCTATTTTCTGATGGCGGCGGTGTCATGGTTGAAGAGTTAATGGTGAAAAGTTGCAACGGTTCTACCCTAGAAATCGGTACTTTGAACAGTCCAGGGTCTTTGCATGATTGCCGGAGTCCATGGCGGCATAATTATCAGCCGTTTGCTGATTCGCGTGTGGGAAGGGATCGCATTATAGCTAGAAAGAGTGTTCAAGCTACATCTAGTGCTACGGAGGATTTTGGGCCCATGTCTTCCCGAGAGATATTAGCTAGAAAATCAGTCAATTATGATCATGGCAGTGTCGTGAAGCACTTGTCCGCTGATGAGCATACAGCCGAGCAAAAAGAGGATGAAGGTGATGCTCGCGAAGGAATGCAAACAAAAACTGCACACAAATCAGGATTTGCAGAGTATTTTAGTAGAAGTACATTGAAGGGAAAGGGTATTGTATGTAAAGGTCCATCTTCTAATGGTTTATATGTTGAGTCCAGAGATCAGAACCTCATGAAGTATGGCATTGATATCCAGACGGATTCTAATGCATTCCCGATCTCCGGTTTAAAGTTTGCAAAGTCTCCACATAATGCTACCGTGCCAGGATTTGGTGAGTCTGACACTGATGGTGTGACTTTGAGAGAATGGTTGAATTCTAGGCACCACAAAGGAAGCAAAACAGAGCATTTAAGTATATTCAGAAAAATTGCAGACTTGGTTGGCGGTTCTCACTCGCAGGGAGTTGCAATGCACAATCTGTACCCTTCTTATATTAAATTGCTACCATCCAACCATGTTATGCATCTTGGGTTGCCAACTCAGAAACACAAATTAGATAGCGTTGCGAATTCTGAAGTTCTTCAGCTAGAGAATTCCCTTATTAGAAAAAGGCTGTCGGAGAAAGTAAAATCTTCCTCTCATAATTTGCGGATGAAGAAACAGAAATTCGCTGATAATGTTAGAGTTGCCGGTGATCAGAGTCAGTGCCCTCCTCGGACTGACTTGTATTATCAAATTGCCAATGATATTAAAGTCAATGCAGCGGTATCACAAGATCATTGCAATCAATACAAGGAAGATATCCAATTTTCTAAGCATAATATTCGGAGACCGTCTCGCCTCCCTCACATATCTAATGCCGGTCAATTCCAATTGAATTCCTCAAACGAAGGATTGGAAGAAGAATGGTATACAAGTCCTGAGGGTGGTTGCACAATATTATCAAATATCTACTGTCTGGGAGTCCTTTTTTTTGAGTTATTTAATCATTTTGATTCAGAAAGAGCACATACTGCTGCGATGTCTGCTCTTCGTGGTAGGATTCTTCCCTCAGCTTTCCTATCAGAGTATCCTAAGGAAGCTGGATTTTGCCTTTGGATGCTGCATCCTGAACCATTATCACGTCCAACAATAAGGAAGATCCTACAATCTGAAGTGATAAATGGAACAAAGGTGGTGGACTGTGAGGAATTATTATCAAGTCTTAACCAATATGATGCAGAATCAGAATTGTTATTGCATTTCCTCATCTCACTGAAAGAGCAGAAACACGGGGATGCCCACAAATTGGCTGAAGAAATCAGATGCATGGAATCAGATATAAAAGAGGTGGAGAGAAGGCATGATTTGAGACTATCCTTGGCTCCTTCGAGCTTGAAGAACAACTCATCCTGCGGAATAGAGGGTGTATCTCTTCTCAAAGAAGCTTCAAGTGCAGAAATATTACCACCAGTATACACAGTTTCCAAAGAAAATGAACTGAGACTGATGAAAAATATGTCCCCACTTGAGAATGTTTACTTTTCTACGAGATCTACAATTAAGCTTCCTGGAACAGAAACAGCAACCCGCCCAGATAAAGATGTGCTGAGAAATTCTGACAACTTCTGTGTAGCTCAAAAAGACATGGAAAAACATACAGATACTTTAGGAGCTTTCTTTGACGGTTTGTGCAAGTATGCGCGTTATCACAAGTTTGAAGTGCGGGGCATACTAAGAACTTCTGATTTTAACAATCCAGTAAATGTAATCTGTTCTCTGAGTTTTGATAGAGATGGAGACTACTTTGCTGCTGCTGGGATATCAAAGAAAATAAAAGTTTTTCAGTTCGATGCAATTTTCAATAACTCTGTCGACATCCATTATCCTGTAGTCGAGATGGTAAACAGATCAAGGCTAAGTTGTGTTTGCTGGAATAGCTACGTCCAGAACTATCTTGCCTCCACAGACTATGATGGTGTAGTTAAGCTATGGGATGCCAATACAGGTCAAGAGTTTTCTCGTCTCACCGAACATGAAAAGAGGGCCTGGTCTGTTGATTTCTCTATTTTATGCCCTACTAAATTTGCCAGTGGGAGTGATGACTGTTCTTTGAAACTGTGGAGTGTCAATGAGAAAAACAGTTTAGGCACAATAAGGAATGTTGCTAATGTCTGTTGTGTTCAGTTCTCTGCTCATTCATCTCATATGCTGGCCTTTGGATCCGCGGATAATTCGGCTTATTGCTATGATCTTCGCTTTCTTCGAAACCCTTGGTGTGTGTTGGGTGGTCATCGTAAATCTGTAAGTTTTGTCAAATTCTTGGACTCTGAAACACTAGTTTCTGCATCAACCGATAATACCTTGAAGATCTGGGATCTCAACAGAACCTCTCCTGTGGGTCGGTCAACTAGTGCTTGCAGCTTAACTCTGACTGGACATACCAATGAAAAGAATTTTGTGGGCTTATCAGTTGCTGATGGATATATAACATGTGGTTCAGAAACAAATGAGGTCTATGCCTACTATAAATCTTTTCCCATGCCAATCATTTCGCACAAGTTTGGGTCCATTGATCCTGTTTCTGGTAAAGAGACTGATGATGACTATAGTCAATTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACATGCTTATTGCAGCCAATACAAGTGGATGTATAAAAGTTCTACAGATGATTTGA 3132 0.4093 MWKDNFDGMDEELEIGEGVQVQHQNKDDGYSLNPEFPGILKPQEYDEIPEDKNMAEGREHLHPGLFSDGGGVMVEELMVKSCNGSTLEIGTLNSPGSLHDCRSPWRHNYQPFADSRVGRDRIIARKSVQATSSATEDFGPMSSREILARKSVNYDHGSVVKHLSADEHTAEQKEDEGDAREGMQTKTAHKSGFAEYFSRSTLKGKGIVCKGPSSNGLYVESRDQNLMKYGIDIQTDSNAFPISGLKFAKSPHNATVPGFGESDTDGVTLREWLNSRHHKGSKTEHLSIFRKIADLVGGSHSQGVAMHNLYPSYIKLLPSNHVMHLGLPTQKHKLDSVANSEVLQLENSLIRKRLSEKVKSSSHNLRMKKQKFADNVRVAGDQSQCPPRTDLYYQIANDIKVNAAVSQDHCNQYKEDIQFSKHNIRRPSRLPHISNAGQFQLNSSNEGLEEEWYTSPEGGCTILSNIYCLGVLFFELFNHFDSERAHTAAMSALRGRILPSAFLSEYPKEAGFCLWMLHPEPLSRPTIRKILQSEVINGTKVVDCEELLSSLNQYDAESELLLHFLISLKEQKHGDAHKLAEEIRCMESDIKEVERRHDLRLSLAPSSLKNNSSCGIEGVSLLKEASSAEILPPVYTVSKENELRLMKNMSPLENVYFSTRSTIKLPGTETATRPDKDVLRNSDNFCVAQKDMEKHTDTLGAFFDGLCKYARYHKFEVRGILRTSDFNNPVNVICSLSFDRDGDYFAAAGISKKIKVFQFDAIFNNSVDIHYPVVEMVNRSRLSCVCWNSYVQNYLASTDYDGVVKLWDANTGQEFSRLTEHEKRAWSVDFSILCPTKFASGSDDCSLKLWSVNEKNSLGTIRNVANVCCVQFSAHSSHMLAFGSADNSAYCYDLRFLRNPWCVLGGHRKSVSFVKFLDSETLVSASTDNTLKIWDLNRTSPVGRSTSACSLTLTGHTNEKNFVGLSVADGYITCGSETNEVYAYYKSFPMPIISHKFGSIDPVSGKETDDDYSQFVSSVCWRGKSDMLIAANTSGCIKVLQMI 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00492 1043 Gene3D - 702 1043 IPR015943 GO:0005515
Viun3g00492 1043 Pfam WD domain, G-beta repeat 903 935 IPR001680 GO:0005515
Viun3g00492 1043 Coils Coil 576 596 - -
Viun3g00492 1043 ProSitePatterns Trp-Asp (WD) repeats signature. 922 936 IPR019775 -
Viun3g00492 1043 SUPERFAMILY Protein kinase-like (PK-like) 451 545 IPR011009 -
Viun3g00492 1043 PANTHER PROTEIN SPA1-RELATED 2 61 1043 IPR044630 GO:0009640
Viun3g00492 1043 ProSiteProfiles Trp-Asp (WD) repeats profile. 793 817 IPR001680 GO:0005515
Viun3g00492 1043 MobiDBLite consensus disorder prediction 164 187 - -
Viun3g00492 1043 SMART WD40_4 719 758 IPR001680 GO:0005515
Viun3g00492 1043 SMART WD40_4 897 935 IPR001680 GO:0005515
Viun3g00492 1043 SMART WD40_4 811 851 IPR001680 GO:0005515
Viun3g00492 1043 SMART WD40_4 946 985 IPR001680 GO:0005515
Viun3g00492 1043 SMART WD40_4 769 808 IPR001680 GO:0005515
Viun3g00492 1043 SMART WD40_4 854 893 IPR001680 GO:0005515
Viun3g00492 1043 SMART WD40_4 1002 1041 IPR001680 GO:0005515
Viun3g00492 1043 ProSiteProfiles Trp-Asp (WD) repeats profile. 904 944 IPR001680 GO:0005515
Viun3g00492 1043 MobiDBLite consensus disorder prediction 164 185 - -
Viun3g00492 1043 ProSiteProfiles Trp-Asp (WD) repeats profile. 818 860 IPR001680 GO:0005515
Viun3g00492 1043 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 904 937 - -
Viun3g00492 1043 Gene3D Transferase(Phosphotransferase) domain 1 265 546 - -
Viun3g00492 1043 ProSitePatterns Trp-Asp (WD) repeats signature. 795 809 IPR019775 -
Viun3g00492 1043 SUPERFAMILY WD40 repeat-like 727 1040 IPR036322 GO:0005515
Viun3g00492 1043 PRINTS G protein beta WD-40 repeat signature 838 852 IPR020472 -
Viun3g00492 1043 PRINTS G protein beta WD-40 repeat signature 922 936 IPR020472 -
Viun3g00492 1043 PRINTS G protein beta WD-40 repeat signature 795 809 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00492 Viun-Chr3 2910268 2917678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00492 838 984 Miscellaneous Gene Families AT5G08390 27.922 1.61e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00492 K16240 - gmx:100776980 1620.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02656 2 32178739 32188232 Viun3g00492 3 2910268 2917678 PCT