Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00476 ATGGAGAACCTTATTTGCATGTTCTCTCTCCTTCTTCTTCTTCTGGCTCCTCCTTTTGCCTCTGCTGGCCATGACTATGCTCAAGCTCTCAGCAAGAGCCTTCTCTTCTTTGAAGCTCAGAGATCTGGCTACCTTCCCCACAACCAGAGAGTCACATGGAGAGCACATTCTGGTCTGCAAGATGGCAAAGCCAGCGGGGTGGATCTAGTTGGAGGGTACTATGATGCAGGGGACAATGTGAAGTTCGGATTACCCATGGCGTTCACCGTTACGATGATGTCGTGGAGCATAATTGAATACGGCAAACAGATGGCTGCGAGCGGTGAGCTTGGCCACGCCATGGAAGCAGTTAAGTGGGGTACAGACTACTTCATCAAAGCACACCCTCAGGCCAATGTTCTCTATGGAGAGGTGGGAGACGGAAACACTGACCATTACTGCTGGCAAAGGCCAGAGGATATGACAACGGACCGTCACGCTTACAAGATCGATCCGAGCAATCCCGGGTCGGATCTTGCCGGAGAAACTGCCGCAGCTATGGCCGCTGCATCCATTGTTTTCCGCCGCTCTAACCCTGCTTATTCCCATGAACTTCTCACTCACGCCTACCAGTTGTTCGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTTGCCCAGAAGTATTACAGATCAATCAGTGGCTACAATGATGAATTGCTTTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAATGAGTATTACTTGGATTACCTTGGAAGAAACGGTGATTCCATGGGTGGAACTGGTTGGACCATGACTGAATTTGGTTGGGATGTTAAGTATGCTGGGGTTCAGACATTGGTTGCCAAGTTCTTGATGCAGGGCAAAGCTGGCCATCATGCACCAGTTTTCGAGAGATATCAGCAGAAGGCTGAATCTTTCATGTGTTCGTGCCTTGGAAAGGGTTCTCGCAATGTTCAGAAGACTCCTGGTGGCCTCATTTTCCGCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCATTTTTAGCCACTGTCTATTCTGACTACCTTACTTCATCTGCTAGGAACTTGAGATGCAATTCAGGCAATGTTGCCCCTGCTGAACTTCTCTCCCTTGCAAAGTCTCAGGTGGACTACCTTCTTGGAAACAACCCAAGAGCAACTAGTTACATGGTGGGCTATGGAAACAACTTCCCACAAAGGGTTCATCACCGAGGTTCATCCATTGTTTCAATCAAGGTTAACCCTTCATTTGTCAGCTGCCGTGGAGGTTATAATACTTGGTTTAGCAGCAAAAGGAGTGACCCCAACCTACTCACCGGTGCTCTTGTTGGTGGACCTGATGCGTATGATGACTTTGCTGATGAAAGAGATAACTATGAGCAGACAGAGCCAGCAACCTATAACAATGCTCCTCTCATTGGTATTCTAGCACGTCTGAATGGAGGTCATGGTGTCTATAACCAGCTTCTTCCAGTTGTTCCTGCTCCTAACCCTGTTGTTATCAAGCCTCGACCATCCCCAAATACCAAGACAACTCCATCTCCAGCTTCATGGTCAGGCCCAATTTCTATTGAACAGAAAATGACCACCTCATGGGTTGCCAATGGAAAAACTTACTACAGATACTCAACAGTGGTGACAAACAAATCTAACAAGAGTCTCAATTCTCTCAATCTTTCAATCTCCAAGCTTTATGGTCCAATCTGGGGTCTCACAAAGTCTGGTGATTCCTACACATTCCCATCATGGCTCAGCTCACTAGCAGCAGGCAAAAGCCTTGAATTTGTCTACATCCATTCTACTTCACCAGCTGATGTCTCTGTGGCTAACTACGTGTTGGCCTGA 1872 0.4738 MENLICMFSLLLLLLAPPFASAGHDYAQALSKSLLFFEAQRSGYLPHNQRVTWRAHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMEAVKWGTDYFIKAHPQANVLYGEVGDGNTDHYCWQRPEDMTTDRHAYKIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSHELLTHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNEYYLDYLGRNGDSMGGTGWTMTEFGWDVKYAGVQTLVAKFLMQGKAGHHAPVFERYQQKAESFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLTSSARNLRCNSGNVAPAELLSLAKSQVDYLLGNNPRATSYMVGYGNNFPQRVHHRGSSIVSIKVNPSFVSCRGGYNTWFSSKRSDPNLLTGALVGGPDAYDDFADERDNYEQTEPATYNNAPLIGILARLNGGHGVYNQLLPVVPAPNPVVIKPRPSPNTKTTPSPASWSGPISIEQKMTTSWVANGKTYYRYSTVVTNKSNKSLNSLNLSISKLYGPIWGLTKSGDSYTFPSWLSSLAAGKSLEFVYIHSTSPADVSVANYVLA 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00476 623 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 387 413 IPR018221 -
Viun3g00476 623 Gene3D - 23 491 IPR012341 GO:0005975
Viun3g00476 623 Pfam Carbohydrate binding domain CBM49 531 608 IPR019028 GO:0030246
Viun3g00476 623 FunFam Endoglucanase 22 493 - -
Viun3g00476 623 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 461 479 IPR033126 -
Viun3g00476 623 PANTHER ENDO-1,4-BETA-GLUCANASE 9 489 - -
Viun3g00476 623 SMART CBM49_2 531 611 IPR019028 GO:0030246
Viun3g00476 623 SUPERFAMILY Six-hairpin glycosidases 24 493 IPR008928 GO:0005975
Viun3g00476 623 Pfam Glycosyl hydrolase family 9 26 485 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00476 Viun-Chr3 2812224 2817134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00476 18 623 Glycoside Hydrolase AT1G64390 80.528 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00476 K01179 - gmx:100801949 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00476 3 2812224 2817134 Viun3g00476 3 2812224 2817134 ECH