Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00449 ATGTCCTATAATCCTTTAACTGAAACTATGTCGATGTCTATGAGCTGCTTTTGCTTGAAGAAAACGAGACCAAAGACTAAGCTAGGACTATCCACCGTTCTTGCTTCGGAAACATCCTTTACTGTGAATGAGATTGAGGCTTTGCTTTGCACGTTTAAGAAATTAAGTAGTGATGATGACTTCCTTCACAAGGAGGAGTTCCATCTTGCACTTTTTGATAATGGTAACAAGCAGAATCTATTTGCAGATAGGGTATTTGATATGTTTGACATCAAGCGTGATGGAGTAATTAGCTTTGGGGAGTTTGTTCGCTCACTCAGTATCTTTCATCCAAATGCCTCTGAAGAGAAGAAAATTGAATTTGCATTTAGATTGTTTGACCTTACACAGAGTGGATACATTGAGCATCACGAGTTGAAGGAAATGGTGTTGGCTACTCTCACTGAATCAGATGTTACAGTTCCCGATGATGTTGTTGAAGCAATTGTGGACAGGACAATGCTGGAGGTTGATTCAAAAGGAGATGGTAAGATAGATAATGAAGAGTGGAGAGATTATGTGACAAAAAATCCTTCTCTTCTGAAGATCATGACTCTACCTTATCTAAAGGATATAACTCTGGCATTTCCCAGCTTTATTTTGCACTCTGAGATGGAAGACTAG 663 0.3891 MSYNPLTETMSMSMSCFCLKKTRPKTKLGLSTVLASETSFTVNEIEALLCTFKKLSSDDDFLHKEEFHLALFDNGNKQNLFADRVFDMFDIKRDGVISFGEFVRSLSIFHPNASEEKKIEFAFRLFDLTQSGYIEHHELKEMVLATLTESDVTVPDDVVEAIVDRTMLEVDSKGDGKIDNEEWRDYVTKNPSLLKIMTLPYLKDITLAFPSFILHSEMED 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00449 220 FunFam calcineurin B-like protein 3 31 220 - -
Viun3g00449 220 PRINTS Recoverin family signature 85 106 - -
Viun3g00449 220 PRINTS Recoverin family signature 132 150 - -
Viun3g00449 220 PRINTS Recoverin family signature 178 198 - -
Viun3g00449 220 SMART efh_1 118 146 IPR002048 GO:0005509
Viun3g00449 220 SMART efh_1 162 190 IPR002048 GO:0005509
Viun3g00449 220 SMART efh_1 81 109 IPR002048 GO:0005509
Viun3g00449 220 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Viun3g00449 220 PANTHER CALCINEURIN B 16 220 IPR045198 GO:0005509|GO:0019722|GO:0019900
Viun3g00449 220 Pfam EF hand 83 104 IPR002048 GO:0005509
Viun3g00449 220 Pfam EF-hand domain pair 116 183 IPR002048 GO:0005509
Viun3g00449 220 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Viun3g00449 220 Gene3D - 31 220 - -
Viun3g00449 220 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Viun3g00449 220 SUPERFAMILY EF-hand 34 212 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00449 Viun-Chr3 2707113 2710346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00449 14 220 EF-hand Containing Proteins AT4G17615 54.286 4.25e-79 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00449 K06268 - vra:106766823 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00449 3 2707113 2710346 Viun3g00449 3 2707113 2710346 ECH