Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00427 ATGGCCATCCTCTCTCAATCCACTGCCAGTTTTTCACCTTCCTTCGTCTCCACTCGCTCCGATTTCACTCGCCTCACTCGCTTCCCCTGCCGCGTCACCTTCCGCCGCGGCCTCGCCGTCTCCTCCTGCTTCAACTCCTCCAAGTCCCCTGGCGCCGGGGGGTTCCTCTCGCCGGACAACGGCGGCGAAGTCTCATACGAGCTGCACCACGACTTCTCGCCGCAACGCCGCCGAAGTGGCTCGCCGGTGTTCGTTACGCTGCCGGTGAATTCCGTCAGCCGGGAGGGCGGCCGAGTCTTGAGGCCCAAGGCGATGATGTTCTCGCTCAAGGCGCTCGCCTCGGCCGGCGTCGAAGGTGTCGTTGTCGAGATTTGGTGGGGCTTGGTTGAGAAGAACAAACCTAGGGTTTACTACTGGAGAGGGTACGAGGAACTTGTTGCGATGGCATGCAAGTGCGGCCTCAAAGTTCGAGCGGTTCTCGCGTTTCATCAGCATGGCGCGGGACCTGATGATCCCAATTGGATACCGCTTCCTCTATGGGTGCTTGATGAGATAAAGAAAGATGTCGAGTTAGCATATTGTGACCGGTTTGGAAGAAGAAATATCGAATATATTTCCCTTGGATGTGATATTCTTCCTGTGCTGTGTGGGCGTTCTCCTATTCAAGTGTATGCTGATTTTATGAGGAATTTTAGGGACACTTTCAGGTCTTTGCTTGGTGTTATAATTACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCCTTCTCTCCACAAGAGCCGAATTTGGCATGGTCTCAAGAACTTGGAGAATTTCAATGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAATGCGTGAATGGGGAAATGGTGGCCCATTTGGTGCTGGAAGTTTGATGCAAAATCTTGAGCATACTGATTTTTTCAAAAATGATGGTGGTTCTTGGGACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAGGTATGTTGCTGCTGCATGGGGAAAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAGGTCCATATATCAGCAAAATTGGCTGTCATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACTGCTGGCTATTATAATACTTTTAACCGGGATGGATACTTATCCATTGCTCGCATGTTTAGTAAGTATGGATTCTCAATGTGCTGCTCCTGTTTTGAAATGCAAGATGCAGTAATGCAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTGTTGGCTGCTAGACTCTGTGACCTAGCACTTGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTTACCCAGGTGCTGAAGATGTCAAAATTTTACTCGAATGGGATAGAGAAGCGGCCTTTCTCGTTCAACTTTGTAAGAATGGATAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTAAGACAAATGTCTAATGGAAATATTTTTCGAGCCAGATTATATTCTGTTGGTGACACACGGTTTAAGACCGCACCAGTGATGCCAGAGGCGAGATTGTTGTACCACCTATATCAGTACTCTTGA 1650 0.4721 MAILSQSTASFSPSFVSTRSDFTRLTRFPCRVTFRRGLAVSSCFNSSKSPGAGGFLSPDNGGEVSYELHHDFSPQRRRSGSPVFVTLPVNSVSREGGRVLRPKAMMFSLKALASAGVEGVVVEIWWGLVEKNKPRVYYWRGYEELVAMACKCGLKVRAVLAFHQHGAGPDDPNWIPLPLWVLDEIKKDVELAYCDRFGRRNIEYISLGCDILPVLCGRSPIQVYADFMRNFRDTFRSLLGVIITGVQIGMGPGGELRYPSFSPQEPNLAWSQELGEFQCYDKYMLASLNASARNIGMREWGNGGPFGAGSLMQNLEHTDFFKNDGGSWDTPYGKFFLEWYSGMLLLHGERICREAETIFRGTEVHISAKLAVIHWHYVTQSHPSELTAGYYNTFNRDGYLSIARMFSKYGFSMCCSCFEMQDAVMQKINPDGSPEGFLRQLLLAARLCDLALEGQNFSTNLDDGAFTQVLKMSKFYSNGIEKRPFSFNFVRMDKRLFESRNWDRFTRFVRQMSNGNIFRARLYSVGDTRFKTAPVMPEARLLYHLYQYS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00427 549 Pfam Glycosyl hydrolase family 14 86 508 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 Gene3D Glycosidases 73 535 - -
Viun3g00427 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 364 380 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 251 273 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 137 155 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 159 180 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 116 130 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 328 347 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 381 392 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 399 422 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 73 514 IPR001554 GO:0000272|GO:0016161
Viun3g00427 549 SUPERFAMILY (Trans)glycosidases 79 537 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00427 Viun-Chr3 2579973 2582875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00427 67 542 Glycoside Hydrolase AT4G17090 48.156 4.43e-150 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00427 K01177 - gmx:100805981 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00427 3 2579973 2582875 Viun3g00427 3 2579973 2582875 ECH