Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00235 ATGGCCTCCTCTGCATATTCGTCTTGGCTCGTGCTCTCATCCACCAGCACCAAACACAAACCCTTCTTCTCTGTCCCCAGCTGCTTCAAATTCAATGTTCCCATCGCTTCACAAATCCAATGGCATTCAGATTCGTATACCCAAAGAAACCTTCGTCCCCCTCCCGAAATTAAACGCCATTGGGTGGAAGCATCTGATAAATCTTTGGATTCTCCGGAAAGATTCACAGTGGCCTCTTACAACATACTGGGAGATAGAAATGCTTCTCAACACTCGGATTTATACGTAAACATTCCTTCTCGTTACATCAAATGGGATCGTCGCAAGAGGGTGATTTCTGATGAGCTTCTTGGATGGGACCCTGATATTGTCTGCTTACAAGAGGTGGATAAGTATTTGGAACTTTCAGACATTATGGTTAAAGCAGGATATGCTGGATCTTATCAGAGACGCACAGGAGATTCAGTTGACGGATGTGCCATGTTTTGGAAAACTGATAAGTTCCGGCTACTAGAAGGAGAGAACATTCAATTTAAGGACATTGGCCTTCGTGATAATGTTGCCCAACTGTCAGTTTTTGAGATGTGTGAATCTTACTCAAGAAGACTGTTAGTTGGTAACATCCATGTACTTTACAACCCAAACAGGGGAGAAGTTAAATTAGGTCAAATTCGTTTTCTCTCGTCAAGAGCACGGTGTCTCTCAGAGAAATGGGGTAATACCCCTGTTGTGCTAGCTGGTGATTTTAATAGTACTCCTCAGAGTGGAATATATAAGTTTTTGTCATCATCTGAGCTTAATGTCAAGCTGTATGACAAAAAGGAATTATCTGGACAAAAACGGTGCCGTCCTGCTCAAGTTTTAGGGGAGAATAAAGAAACCGTTGGTCCAGTTGTCACCCTAGACGGCTTGTTATGTTGGACAGATGAAGAGATAAAAATAGCAACTGGAGATTCTCAGTGTCATTTGGCTGTGCACCCATTGAAGCTGAATAGTTCGTATGCTACAGTTAATGGTTCAACAAGTACACGGGGATTCAATGATGAACCCTTGGCAACTTCCTACCACTCAAAGTTTCTTGGCACTGTAGATTACTTATGGTACTCTGACGGTATTGTACCTACTAGAGTTCTTGATACCGTTTCAATTAGTGATCTCCTGAGGGCAGGTGGCCTACCATGCAAGGTGGGAAGTGATCATTTGGCCTTGGTTTCTGAATTTACTTTCTCAGTTACAAACAATGAACCTACAGACATAATGGCGGTAGGAGAAGCAGCACCAGCTATAAGATATTGA 1296 0.4267 MASSAYSSWLVLSSTSTKHKPFFSVPSCFKFNVPIASQIQWHSDSYTQRNLRPPPEIKRHWVEASDKSLDSPERFTVASYNILGDRNASQHSDLYVNIPSRYIKWDRRKRVISDELLGWDPDIVCLQEVDKYLELSDIMVKAGYAGSYQRRTGDSVDGCAMFWKTDKFRLLEGENIQFKDIGLRDNVAQLSVFEMCESYSRRLLVGNIHVLYNPNRGEVKLGQIRFLSSRARCLSEKWGNTPVVLAGDFNSTPQSGIYKFLSSSELNVKLYDKKELSGQKRCRPAQVLGENKETVGPVVTLDGLLCWTDEEIKIATGDSQCHLAVHPLKLNSSYATVNGSTSTRGFNDEPLATSYHSKFLGTVDYLWYSDGIVPTRVLDTVSISDLLRAGGLPCKVGSDHLALVSEFTFSVTNNEPTDIMAVGEAAPAIRY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00235 431 Gene3D Endonuclease/exonuclease/phosphatase 47 424 IPR036691 -
Viun3g00235 431 FunFam Carbon catabolite repressor protein 4 homolog 3 49 419 - -
Viun3g00235 431 Pfam Endonuclease/Exonuclease/phosphatase family 78 400 IPR005135 GO:0003824
Viun3g00235 431 SUPERFAMILY DNase I-like 63 412 IPR036691 -
Viun3g00235 431 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 49 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00235 Viun-Chr3 1349433 1356997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00235 105 263 EF-hand Containing Proteins AT5G54130 28.902 2.33e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00235 - - gmx:100779393 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00235 3 1349433 1356997 Viun3g00235 3 1349433 1356997 ECH