Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00197 ATGGCGGGTTCTTCGATCATGGAGAACCTCTTCCAACGCTCGCTGGAGGATATGATAAAATCCATGCGCCTCCAACTCATCGGCGAAACTACCTTCATCTCCAAGGCCACGGAGGAGATCCGCCGGGAGATCAAATCTACCGACCAGCAAACCAAATCCACCGCGCTGCAGAAGCTCTCTTACCTCTCCGCCGTGCACGGCGTGGACATGTCCTGGGCGTCCTTCCACGTCGTCGAGGTCATGTCCTCATCCAAGTTCGCGCACAAGAGGATCGGTTACCACGCGGCTTCCCAATCCTTCAACGACGACACGCCGGTGCTCCTACTCATCACCAACCAGCTCCGCAAGGACCTCTCCTCCACCAACGAGTTCGAGGTAAGCCTCGCTCTCGATTTGTTGTCGCGAATTGCCACTTTCGACCTCGCGCGCGATTTGACGCCCGAGGTTTTCAAGTTGCTCTCCACCGCTAAGATTTTCGTCAGGAAGAAGGCTATCGCCGTCGTTTTGAGGGTTTTCGATAAGTACCCCGACGCAGTTAGGGTTTGTTTCAAGCGCTTGGTTGAGAATCTCGAGAGTTCCGATCCTCTGGTTGTTACCGCCGTGATTGGAGTTTTCTGCGAGCTGGCTGCCAAAGATCCTAGGTCGTATCTTCCCTTGGCGCCGGAGTTTTATAGGATTTTGGTTGATTCTAAGAACAATTGGGTTTTGATCAAGGTGCTCAAGGTGTTTGCTAAGTTGGCTCCCTTGGAGCATAGATTAGGGAAAAGGATTGTTGAGCCGGTTTGTGATCACATGAGGAGGTCTGGGGCCAAGTCCTTGGTGTTTGAGTGTGTTAGGACTGTGCTCACTAGCTTGAGTGATTTTGAGTCAGCTGTTAAGCTCGCGGTTGAGAAGGTTAGGGAGTTGGTGGTTGATCAGGATCCCAATCTTAGGTATCTTGGACTGCAAGCACTTTCGGTTGCTGCACCCAAGCACTTGTGGGCAGTCTTGGAGAATAAGGAAGCGGTGGTAAAGTCGTTGAGCGATGATGATTTCAATATCAAGATTGAGTCTCTGCGTTTGTTGATGGCCATGGTATCTGAGAGCCATGTTGCAGATATCTCCAGGGTGTTGCTTAATTATGCGTTGAAATCTGAACCTGGATTTTGCAACGAGATATTGGATTCCATTTTGAGGACATGTTCTAGAAATTTGTATGAGATTGTTGTTGACTTTGATTGGTATGTGTCTCTTCTTGGAGAAATGGCCACGATTCCTAATTGCCAAAAGGGGGGAGAGATTGAAACTCAGCTTGTTGACATTGGCATGAGAGTTAAGGATGCTAGAATGGAGCTCGTTCGGGTGGGGCGTGATCTGTTGATTGACCCTGCATTACTGGGTAATGGGCACTTGCATAGGATATTGTGTGCTGCAGCTTGGGTTGCTGGAGAGTATGTTGAATTTGCAAGCAATCCCTTTGAACTCATGGATGCACTCCTGCAGCCTCGTACCAGTCTCTTGCCACCATCCATTAGAGCAGTTTATATTAATTCTGTTCTTAAAATTTTAATTTTTTGTCTGGACTGCTACGTTTTGCAAAATGATGGTTCTGGATCTTTATATTCTGGTAATTTGGAAGGGGAACAGTCAGAGTTGTTTAGTGCAAAAAACGACGCTGAGGCTACGAAATTGGCAACTTCTGGAGGTTCAAATTATGAACAGGATGTTGGTTTTAACCCAAGGAATACAGGTGACTCTTCTGAAGATCTCTCTGTTGAAAATGGTATAGATAGAGTTGCTACTCATGGTAAAACATTTACATCTACTCTAGTGGCAAGGAAGAATTTCTTGCACGGATCTATTGTAAGCTTATTGAATAGAATTGAATTAATTTTTGGCCCGCTAATAACAAACCAGGATGTTGAAGTGCTGGAGAGAGCACAAAACATACTTTCCCTTGTTCAGTTGATTAAAGAAGAAATAATTGATAATTCAGTCCAGAGTGTGGACACCATAGAAAAGAAAGATACTCGAGTTTCAACTATTATCAATTTGATGCGTGATGCTTTTACAACGGAACTTGGTCCAGTCTCAGTAAGTGCTCAGGGAAGGGTTGCTGTGCCGGAAGGACTAGTTCTTAAAGAAAACCTTGATGAATTACAAGCTATATGTGGTGACACTGAACTATCTTCATCAAGTTCGTTTGCCACAGGTGGCCCTCACCATACCACTATTTCCGATGCTTCTTCATCTAATCTTCTGCAAAATGAAGAGTTAGGGCCTTTGAATGAATCCACATCCTTGATTGAACACCGTAAACGGCATGGGTTATATTATCTTCCTTCAGAGAAGAGTGAGATTGTTCCAGATGAGTATCCTCGTGCAAATGATCCGAAGTCAAACAGTAATATAAATGATGAAGCTGCCGAACTAGTCAAGCTGACAGAGCAATCACTTCTTATGAAGAAAAGGACAAACCAAACAAAGCCCAGGCCGGTAGTAGTGAAATTGGATGATGGAGATCTGGCACCAATTTCAGTCAAAAGGCCAGAGCCGAGGGACGATTCTCTTTCTGGTGCCATACAAGATGTTCTTCAAGGAAGTGAAAGTGGACCAAGTGTGTCTCGAAGTTACCCTTCTAATAAGTCATCAAGGAAGCAGAAAGAGAAAAAGAAACTAAGCACGAATGGTCGATCTGAAATGAAGGAAAATTCAGTTGATTCAGAAAAGCCTGACCCTGAAAGTGCAAATTCTAGTCACAAAAATCATGGTCATAGTAAAGAAAGAAAACACAGAGGAAAAGAAAAGATTGTTGAGGGTGAAGAGCATGATCAGGAGGGAAAGAAAAAGAGTGGCCACCGCCATGGTAGGAGAAAAACTCATCAAAGAGCGAAGTCACCCTTAAATGTGGCTTCCCAAACCCCAGTCATTCCAGATTTTCTTTTGTAG 2928 0.4491 MAGSSIMENLFQRSLEDMIKSMRLQLIGETTFISKATEEIRREIKSTDQQTKSTALQKLSYLSAVHGVDMSWASFHVVEVMSSSKFAHKRIGYHAASQSFNDDTPVLLLITNQLRKDLSSTNEFEVSLALDLLSRIATFDLARDLTPEVFKLLSTAKIFVRKKAIAVVLRVFDKYPDAVRVCFKRLVENLESSDPLVVTAVIGVFCELAAKDPRSYLPLAPEFYRILVDSKNNWVLIKVLKVFAKLAPLEHRLGKRIVEPVCDHMRRSGAKSLVFECVRTVLTSLSDFESAVKLAVEKVRELVVDQDPNLRYLGLQALSVAAPKHLWAVLENKEAVVKSLSDDDFNIKIESLRLLMAMVSESHVADISRVLLNYALKSEPGFCNEILDSILRTCSRNLYEIVVDFDWYVSLLGEMATIPNCQKGGEIETQLVDIGMRVKDARMELVRVGRDLLIDPALLGNGHLHRILCAAAWVAGEYVEFASNPFELMDALLQPRTSLLPPSIRAVYINSVLKILIFCLDCYVLQNDGSGSLYSGNLEGEQSELFSAKNDAEATKLATSGGSNYEQDVGFNPRNTGDSSEDLSVENGIDRVATHGKTFTSTLVARKNFLHGSIVSLLNRIELIFGPLITNQDVEVLERAQNILSLVQLIKEEIIDNSVQSVDTIEKKDTRVSTIINLMRDAFTTELGPVSVSAQGRVAVPEGLVLKENLDELQAICGDTELSSSSSFATGGPHHTTISDASSSNLLQNEELGPLNESTSLIEHRKRHGLYYLPSEKSEIVPDEYPRANDPKSNSNINDEAAELVKLTEQSLLMKKRTNQTKPRPVVVKLDDGDLAPISVKRPEPRDDSLSGAIQDVLQGSESGPSVSRSYPSNKSSRKQKEKKKLSTNGRSEMKENSVDSEKPDPESANSSHKNHGHSKERKHRGKEKIVEGEEHDQEGKKKSGHRHGRRKTHQRAKSPLNVASQTPVIPDFLL 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00197 975 PIRSF AP3_delta 1 560 IPR017105 GO:0015031|GO:0030123
Viun3g00197 975 PIRSF AP3_delta 585 969 IPR017105 GO:0015031|GO:0030123
Viun3g00197 975 Gene3D - 4 553 IPR011989 -
Viun3g00197 975 MobiDBLite consensus disorder prediction 925 942 - -
Viun3g00197 975 MobiDBLite consensus disorder prediction 857 975 - -
Viun3g00197 975 MobiDBLite consensus disorder prediction 857 874 - -
Viun3g00197 975 Pfam Adaptin N terminal region 31 493 IPR002553 GO:0006886|GO:0016192|GO:0030117
Viun3g00197 975 MobiDBLite consensus disorder prediction 724 746 - -
Viun3g00197 975 PANTHER DELTA ADAPTIN-RELATED 1 974 IPR017105 GO:0015031|GO:0030123
Viun3g00197 975 MobiDBLite consensus disorder prediction 943 957 - -
Viun3g00197 975 SUPERFAMILY ARM repeat 30 662 IPR016024 -
Viun3g00197 975 MobiDBLite consensus disorder prediction 886 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00197 Viun-Chr3 1093643 1096890 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00197 K12396 - gmx:100815221 1594.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00197 3 1093643 1096890 Viun3g00197 3 1093643 1096890 ECH