Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00105 ATGGCGGCAATCGCAGTTCCCCAACACCGATCCTCCAAGACGGAGTCCTATGTCGACAACAAGCGTAAGGAAGACATCCGCCATGCCAACATCGTGGCCGCTCGCGCCGTCGCCAACGCTGTGCGCACCAGTCTTGGCCCCAAGGGCATGGACAAGATGATCTCCACCTCCTCCGACGAGGTTATCATTACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAGCCCGCAGCCAAGATGCTCGTCGAACTCTCCAAGTCGCAGGACTCCGCTGCCGGTGACGGCACTACCACGGTCGTCGTTATCGCCGGCGCCCTACTCGAGCAGTGCCTCCTCCTACTGTCCCATGGCATTCACCCCACCATCGTCTCCGACTCCCTCCACAAGGCCGCCGTAAAGGCAGTGGATGTTCTCACCGCCATGGCTGTCCCCGTGGAGCTCTCGGACCGCGACTCGCTCGTGAAGTCCGCCAGCACCTCTCTCAACAGCAAGGTTGTGAGCCAGTACTCCACGCTTCTCGCGCCCCTCGCCGTCGACGCTGTTCTCTCCGTCGTTGATGCGGCCAAGCCCGACATGGTTGACCTCCGCGATGTCAAGATCGTGAAAAAGCTTGGCGGCACCGTGGATGACACCGAGCTTGTGAAAGGACTCGTCTTCGACAAGAAGGTTAGCCACGCGGCGGGGGGACCCACCCGCATGGAGAACGCCAAGATCGCCGTCATCCAGTTCCAGATATCGCCACCGAAAACCGACATCGAACAGAGCATCGTGGTGAGTGATTACTCTCAGATGGATAGGATTTTGAAGGAAGAGCGTAGTTATATCCTTGGCATGATTAAGAAGATCAAGGCAACTGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGATGCTGTTACTGATTTGTCCTTGCACTACCTTGCAAAAGCTAAGATTTTAGTGATTAAGGACGTGGAGAGGGATGAGATTGAGTTTATTACCAAAACCTTGAATTGTTTGCCCATTGCTAACATTGAACATTTCCGCGCTGAGAAGTTGGGTTATGCCGATCTTGTGGAAGAGGTTTCTCTTGGGGATGGGAAGATTGTGAAGATTAATGGTATTAAGGAGATGGGGAAGACCACTACAGTGCTCGTTCGTGGGTCTAATCAGCTTGTGCTTGATGAGGCGGAGCGGAGTTTGCACGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTCTAATTGCTGGCGGTGGGGCGCCGGAGATCGAGCTTTCGAGGCAGTTGGGTGCCTGGGCTAAGGTGTTGCATGGAATGGAGGGTTACTGTGTGAGGGCATTTGCTGAGGCACTAGAAGTTATTCCCTATACTCTTGCAGAAAATGCTGGTTTGAACCCCATTGCCATTGTTACTGAGCTGAGGAATCGGCATGCGCAAGGTGAGATAAATGCTGGAATCAATGTGAGGAAGGGTCAGATCACCAATATCTTGGAGGAGAATGTGGTGCAACCGCTGCTTGTGAGCACAAGTGCGATTACCTTGGCAACTGAGTGTGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGCGGTAG 1602 0.53 MAAIAVPQHRSSKTESYVDNKRKEDIRHANIVAARAVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSHGIHPTIVSDSLHKAAVKAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDAAKPDMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKINGIKEMGKTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00105 533 Gene3D - 34 530 IPR027413 -
Viun3g00105 533 SUPERFAMILY GroEL-intermediate domain like 150 411 IPR027410 -
Viun3g00105 533 ProSitePatterns Chaperonins TCP-1 signature 1. 42 54 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Viun3g00105 533 SUPERFAMILY GroEL apical domain-like 213 386 IPR027409 -
Viun3g00105 533 ProSitePatterns Chaperonins TCP-1 signature 3. 91 99 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Viun3g00105 533 Gene3D GroEL 218 377 IPR027409 -
Viun3g00105 533 Gene3D - 147 413 IPR027410 -
Viun3g00105 533 FunFam T-complex protein 1 subunit delta 218 376 - -
Viun3g00105 533 NCBIfam thermosome subunit beta 22 531 - -
Viun3g00105 533 CDD TCP1_delta 19 532 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Viun3g00105 533 NCBIfam T-complex protein 1 subunit delta 19 532 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Viun3g00105 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 381 403 IPR017998 GO:0140662
Viun3g00105 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 91 110 IPR017998 GO:0140662
Viun3g00105 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 61 79 IPR017998 GO:0140662
Viun3g00105 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 39 55 IPR017998 GO:0140662
Viun3g00105 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 415 427 IPR017998 GO:0140662
Viun3g00105 533 PANTHER CHAPERONIN 20 530 IPR017998 GO:0140662
Viun3g00105 533 NCBIfam thermosome subunit alpha 21 531 - -
Viun3g00105 533 SUPERFAMILY GroEL equatorial domain-like 20 531 IPR027413 -
Viun3g00105 533 Pfam TCP-1/cpn60 chaperonin family 37 531 IPR002423 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00105 Viun-Chr3 486287 488401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00105 192 427 EF-hand Containing Proteins AT3G14270 25.769 1.43e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00105 K09496 - gmx:100786888 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00105 3 486287 488401 Viun3g00105 3 486287 488401 ECH