Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00104 ATGAAGAGCGCGAGTGTCTGCGCAGTGCAACCTCTCTCAGCAGTGACCACCATGCCTATGGCATATTCCGGCGTATTTCAGGGCTTCATCAGATTCAAAACCATGTCGCGGCTTCGCTGCACTCCTCTCAGACCTTATTTTTCATCCATTTCCACCACTCCTCTTCACCGCACCGCCATTCGCCTCCGCTCCTCCTCCAACGCGCTTCAAGTTGTCAACGTCACGCGCCCGAGGACCGTCGCGCGCCAGGGGACCGTTACGTTGCCGTTTTGGCACCAGCGAAGCTCCAGCTACGGCCGTTTTGCGTACCAGGACGTGTCCAGTGACGATTCCGATGTCGAATTTGCGTCTTATCCCTCTCACAGCCAACAAGTGGGGGATTCAACGCTCGAGAACATTGACGAGTGGAGATGGAAGCTGACCATGCTTATGCGCTCCAAAGACGAACAAGAAGTGGTGTCCAGAGAGAAGAAGGACCGTCGCGATTTCGAGCAGCTTTCCACTTTAGCTACCAGGATGGGTTTGTATAGCCGGCAATATGCAAGAGTTGTTGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAACGCCCGCAGAGAGAGGTAGTCTTACCATTTGACGTTCATAAAGAAGTAGATGCTCGTCTCCATGCCCATCTTTCACAAAAGGCTACTGCAAGCAAGTGGAGTTATTTGAATGATTCATTGCATAAATCAAGTGATGCTATAAGCATTCCAGCCAATGAAGGAATGCATGAACAGCCAGAGCCCTTGACTCATAATAGTGTTGTCAAGGAGAAAATCCTGCAACGAAGAAGTTTGCAACTGCGTCATCGGCAACAAGATTGGCAGGAGTCTCATGAAGGGCAAAAGATGCTCGAATTTCGCAGAAGTCTTCCCGCGTTCAAAGAGAAGGATGCATTTTTGAGACTTATTTCAGAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGACTGAGGCTGCCCGCGGAGCTGTATGTAACATAATTTGTACTCAGCCCAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAGTTAGGAGAATCTGTTGGATACAAAGTTCGCTTGGAGGGTTTGAAAGGGAGAGATACCCGTCTTCTGTTTTGCACCACTGGCGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAAATTCTCCCTCATCGTCCTGATTTGAGATTGGTTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGCTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGAACTAGACATCGGTTGACACCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCAAATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCGGACTTTAAGGGATATAGCCTGCACACCCAAGATTCATTGTCCTGTTGGTGCCCTGATTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGTCACATTGTTAAGAATGAAAGGCCAGGAGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGGTCATCCTTTGTTGGGTGATCCGAGCCGAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTTTGGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACATCATATGACGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTTCAGCCCGGCAGAGGAGAGGAAGGGCCGGCCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTGTGCCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAAAGCTCTACAGCCACCGGAGCCTCTATCGGTTGAAAATGCTGTTGAGTATTTGAAGATTATTGGGGCCTTAGACGGGAATGAAAATTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTAGAACCCAAACTTGGCAAGATGCTCATTTTAGGAACCATCTTCAAGTGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTAAGTGTAAGAGATCCATTTGTGACGCCATCTGACAAGAAAGACCTTGCAGAGTCTGCCAAAGCCCAATTTGCTGCTCGTGACTATAGTGATCATCTTGCACTTGTCCGGGCTTATGAGGGTTGGAAAGATGCTGAGACACAGCAGGCTGGTTATGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAAGGCCATTGAGTCTCTTAGAAAGCAATTCCTTTACTTGCTCAAAGATATTGGTCTGGTCAATGACAAGCCTGAAACCTACAATGCATGGAGTCATGAAATGCATCTCATCCGAGCAGTCATCTGTGCGGGTTTGTTTCCCGGAATATCTTCTGTTATGAACAAAGATAAGTCAATAGCACTGAAGACAATGGAGGATGGTCAGGTTCTTTTGTATTCTAGCTCTGTAAATGGCTGTGTACCTCGAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTCAGAGATTCAACTGGTATATCTGATTCGGTGCTTCTCTTGTTTGGTGGGAATGTATCCAGAGGTGGACTAGATGGTCACCTGAAAATGTTGGGGGGCTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACTTACTTGAGCTTAAAGATGGAACTGGAAGAATTGATACAGAAAAAGCTTCTGGATCCCAAGCAGGAAACACAATCGCATAGTCAGCTTCTTTCAGCTGTCAGATTGTTGGTTTCAGAAGACCATTGTGATGGTAGGTTTGTCTTTGGTCGCCAAGTTCTATCACAGGTAAAGAAGGAAACAAACTCCAAAAGTGGAGTCGAGGCTGAAAATTTTAAAAATCAACTTCAGTCATTTCTTAACAGGGCTGGACATGACTCACCAACTTACAAAACAACGCAGCTGAAAAACAGCCAATTCCGTTCTACTGTCATATTTAATGGGTTGAATTTTGTTGGTAAGCCTTGCGGCAGCAAGAAATTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTTCTATGGTTGAAAGGGGATAGCCATTCATCTGATGGTATTGACCATGCATCAGTTCTTTTGAAGAAGAGCAACAAGAAAAGTAGGAAGAAATCGTTTAGTGGCGCTAAGTGGAGTTGA 3603 0.4385 MKSASVCAVQPLSAVTTMPMAYSGVFQGFIRFKTMSRLRCTPLRPYFSSISTTPLHRTAIRLRSSSNALQVVNVTRPRTVARQGTVTLPFWHQRSSSYGRFAYQDVSSDDSDVEFASYPSHSQQVGDSTLENIDEWRWKLTMLMRSKDEQEVVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVVLPFDVHKEVDARLHAHLSQKATASKWSYLNDSLHKSSDAISIPANEGMHEQPEPLTHNSVVKEKILQRRSLQLRHRQQDWQESHEGQKMLEFRRSLPAFKEKDAFLRLISENQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGLKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKEILPHRPDLRLVLMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTRHRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVADFKGYSLHTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQGHPLLGDPSRVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSKALQPPEPLSVENAVEYLKIIGALDGNENLTVLGHKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVTPSDKKDLAESAKAQFAARDYSDHLALVRAYEGWKDAETQQAGYEYCWRNFLSSQTLKAIESLRKQFLYLLKDIGLVNDKPETYNAWSHEMHLIRAVICAGLFPGISSVMNKDKSIALKTMEDGQVLLYSSSVNGCVPRIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQKKLLDPKQETQSHSQLLSAVRLLVSEDHCDGRFVFGRQVLSQVKKETNSKSGVEAENFKNQLQSFLNRAGHDSPTYKTTQLKNSQFRSTVIFNGLNFVGKPCGSKKLAEKSAAAEALLWLKGDSHSSDGIDHASVLLKKSNKKSRKKSFSGAKWS 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00104 1200 Pfam Helicase associated domain (HA2) 767 853 IPR007502 GO:0004386
Viun3g00104 1200 MobiDBLite consensus disorder prediction 1184 1200 - -
Viun3g00104 1200 SMART DRBM_3 1103 1166 IPR014720 -
Viun3g00104 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 883 IPR027417 -
Viun3g00104 1200 Pfam DEAD/DEAH box helicase 313 465 IPR011545 GO:0003676|GO:0005524
Viun3g00104 1200 FunFam DExH-box ATP-dependent RNA helicase DExH3 257 482 - -
Viun3g00104 1200 PANTHER ATP-DEPENDENT RNA HELICASE 251 1052 - -
Viun3g00104 1200 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 923 1005 IPR011709 -
Viun3g00104 1200 SUPERFAMILY dsRNA-binding domain-like 1101 1170 - -
Viun3g00104 1200 SMART ha2_5 766 857 IPR007502 GO:0004386
Viun3g00104 1200 Gene3D - 1082 1170 - -
Viun3g00104 1200 MobiDBLite consensus disorder prediction 1180 1200 - -
Viun3g00104 1200 FunFam Putative ATP-dependent RNA helicase DHX36 746 851 - -
Viun3g00104 1200 CDD SF2_C_RHA 561 712 - -
Viun3g00104 1200 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 481 IPR014001 -
Viun3g00104 1200 Gene3D - 746 848 - -
Viun3g00104 1200 Pfam Helicase conserved C-terminal domain 572 703 IPR001650 -
Viun3g00104 1200 SMART helicmild6 598 704 IPR001650 -
Viun3g00104 1200 FunFam DExH-box ATP-dependent RNA helicase DExH3 566 722 - -
Viun3g00104 1200 SMART ultradead3 302 495 IPR014001 -
Viun3g00104 1200 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 744 IPR001650 -
Viun3g00104 1200 Pfam Double-stranded RNA binding motif 1104 1165 IPR014720 -
Viun3g00104 1200 Gene3D - 566 722 IPR027417 -
Viun3g00104 1200 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1102 1167 IPR014720 -
Viun3g00104 1200 Gene3D - 257 482 IPR027417 -
Viun3g00104 1200 CDD DEXHc_RHA-like 320 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00104 Viun-Chr3 472134 484245 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00104 K14442 - gmx:100791006 2067.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00104 3 472134 484245 Viun3g00104 3 472134 484245 ECH