Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00066 ATGGCCTCGATGTTTCTCACTCTCACTGCAATTTTCTTTCTAGTTTCTACCCTCTCACCGCTCAGCGTTTCAGCGGTGTCATTTGTACTCTACAACAAGTGTCCACACCCAGTGTGGCCCGGGATCCAGCCCAGTGCTGGAAAGCCCATTCTAGCCCGCGGAGGCTTCAAGCTCGCCCCTAACCGGGCCTACACCCTCCAACTCCCGGCCCTCTGGTCCGGCCGCTTCTGGGGCCGTCACGGCTGCGCCTTCGACGCCTCCGGACGAGGGCGCTGCGCCACGGGCGACTGCGGCGGCTCCCTCTACTGCAATGGCATCGGCGGAACCCCGCCGGCCACCCTGGCGGAGTTCACCCTGGGCAACGAGCAGGACTTCTACGACGTGAGCCTGGTCGACGGGTACAACCTCCCCATCTCCATCACCCCCTTCAAGGGATCCGGAAAATGCAGCTACGCGGGCTGCGTCAGCGACCTCAACAACATGTGCCCCGTGGGCCTGCAGGTGCGTTCACGCGACAACAAGCGCGTGGTGGCCTGCAAGAGCGCCTGCTCCGCCTTCAACTCCCCCAAGTACTGCTGCACGGGCTCCTACGGAAGCCCGCAGGCCTGCAAGCCCACCGTTTATTCGAAGATCTTCAAAGCCGCATGCCCCAAAGCCTACTCCTACGCCTATGACGACCCCACCAGCATCGCCACTTGCACCAAAGCTAACTATTTGCTCACTTTCTGCCCCCATCGCCACTGA 744 0.6196 MASMFLTLTAIFFLVSTLSPLSVSAVSFVLYNKCPHPVWPGIQPSAGKPILARGGFKLAPNRAYTLQLPALWSGRFWGRHGCAFDASGRGRCATGDCGGSLYCNGIGGTPPATLAEFTLGNEQDFYDVSLVDGYNLPISITPFKGSGKCSYAGCVSDLNNMCPVGLQVRSRDNKRVVACKSACSAFNSPKYCCTGSYGSPQACKPTVYSKIFKAACPKAYSYAYDDPTSIATCTKANYLLTFCPHRH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00066 247 SUPERFAMILY Osmotin, thaumatin-like protein 27 245 IPR037176 -
Viun3g00066 247 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
Viun3g00066 247 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Viun3g00066 247 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Viun3g00066 247 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Viun3g00066 247 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Viun3g00066 247 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Viun3g00066 247 PANTHER OS03G0233200 PROTEIN 14 244 IPR001938 -
Viun3g00066 247 PIRSF PR5 1 247 IPR001938 -
Viun3g00066 247 Pfam Thaumatin family 32 244 IPR001938 -
Viun3g00066 247 Gene3D Thaumatin 26 244 IPR037176 -
Viun3g00066 247 SMART tha2 28 244 IPR001938 -
Viun3g00066 247 CDD TLP-PA 27 243 - -
Viun3g00066 247 ProSiteProfiles Thaumatin family profile. 25 246 IPR001938 -
Viun3g00066 247 FunFam Thaumatin-like protein 1a 26 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00066 Viun-Chr3 278872 279981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00066 6 245 Receptor kinase-like Gene Family AT5G38280 44.939 1.19e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00066 - - gmx:100784636 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00066 3 278872 279981 Viun3g00066 3 278872 279981 ECH