Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00048 ATGCCTCGCCCCAAGTGGTTGTTCCTCTCTCTCGCGCTCTCTTTCTCTCTCCTCACTCTCTCTCTCTCCGTCGCTGCACGCCAATTCGTGCTCGTGCTCTCTCAGGAAGACTTCAAGGACGACCCGGGCGCCGAACCCGATTCCTCCGCCGAGTGGGACGAGCTCGGCGATGGAGACGCCCACAAATCTGAGGAGGACCTCGACCCTGGCTCATGGCGCCCCATCTTCGAGCCCCCCACCGGAGACCCCCAGCCTCTCTCAGAATCCGACGCCGCCTACTACTCCGCCGTCGACAAGCTCATGTCAGGTAACCCCGCCCTCATTGAGGAAGGCGCCGCAGAGATCGCTGCCGCGGCCGAGACCGGCCATCCCGCCTCGCAATCGGTTCTAGGGTTTTTGTGGGAAATGGGGCTTTTGAGAGAGCGAAGCAAGGGGAAGGCGTTTTTGTATCACCACTTCGCCGCCGAGGGCGGCATCATGCAGTCCAAGATGGCTTTGGCTTATAAGTACACGCGTCAAGATATGTTTGACAAAGCTGTTAATCTGTATGCTGAATTAGCTGAAGTGGCTGTGAATAATTTTCTGATTTCGAAAGATTCTCCTGTGATTGAACCGGTTAGGCTCCACAATGGGGCTGAGGAGAACAAGGAGGCTCTGAGAAAATCAAAGGGGGAAGAGGATGAGGACTTTCAGATACTGGAGTATCAAGCCCAGAAGGGGAATGCTGCTGCCATGTACAAAGTTGGCCTCTTTTACTACTTTGGCCTCAGGGGATTGAGGCGTGATCATTCCAAGGCGCTGTCATGGTTTTTGAAGGCTGTGGAGAAGGGAGAGCCCCGATCTATGGAGCTTCTTGGAGAGATCTATGCTAGGGGAGCAGGTGTTGAGAGAAACTACACCAAAGCGTTTGAGTGGCTCACGCTTGCTTCCAGGCACCAGCTGTATTCTGCTTATAATGGGATGGGATATTTGTATGTCAAAGGCTATGGAGTTGACCAGAAGAATTACACTAAAGCAAAGGAGTATTTTGAAAAGGCTGCAGAGAATGACGAGGTTGGGGGGCACTATAACTTGGGTGTCATGTATCTCAAGGGGATTGGAGTTAAGAGGGATGTTAAGCTGGCTTGCAAGTTCTTTGTGGTGGCTGCTAACAATGGTCAACCAAAAGCGTTCTACCAGTTGGCTAAGATTTTCCACAATGGTGTTGGGTTCAAGAAGAATATTCACTTGGCTACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCCTGGAGTTCTTTGTCTAGATGGGCTCTAGAGTCATACTTAAAAGGTGATCTTGGCAAAGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGGTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGACAAATATGGGGAACGTAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGAGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGGGTACGGCCAGGGATTATGAGCGAGCTGCTGAAGCTTACCAGCATGCCAAATCACAATCTAATGCACAAGCCATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCATTTGACCTTCATCTAGCCAAGCGTTACTATGATGAAGCTCTGGATCATGATCGTGCAGCGAAGCTGCCAGTTACACTGGCTCTTTCAAGCTTATGGATTCGTAAGAACTATGCTGACAGTTTCATGGTCCACGTGATTGATTCATTGCCAGAACTGTATCCAAAATTAGAAGCTTGGGTGGAGAATGTGCTGATGGAGGAGGGAAATGCTACGATTTTGACCCTCTTTGCATGCCTCATAACTGTGCTATATCTCCGCGAGAGGCAACGAAGGCAAGCTGGTGTTGCAGCTGGAGAGGTGGCTCAACCAAATCACCCCAACGAGCTTGGTGTACCTGCACTCTAG 2016 0.502 MPRPKWLFLSLALSFSLLTLSLSVAARQFVLVLSQEDFKDDPGAEPDSSAEWDELGDGDAHKSEEDLDPGSWRPIFEPPTGDPQPLSESDAAYYSAVDKLMSGNPALIEEGAAEIAAAAETGHPASQSVLGFLWEMGLLRERSKGKAFLYHHFAAEGGIMQSKMALAYKYTRQDMFDKAVNLYAELAEVAVNNFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASRHQLYSAYNGMGYLYVKGYGVDQKNYTKAKEYFEKAAENDEVGGHYNLGVMYLKGIGVKRDVKLACKFFVVAANNGQPKAFYQLAKIFHNGVGFKKNIHLATALYKLVAERGPWSSLSRWALESYLKGDLGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYERAAEAYQHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDEALDHDRAAKLPVTLALSSLWIRKNYADSFMVHVIDSLPELYPKLEAWVENVLMEEGNATILTLFACLITVLYLRERQRRQAGVAAGEVAQPNHPNELGVPAL 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00048 671 Pfam Sel1 repeat 316 350 IPR006597 -
Viun3g00048 671 Pfam Sel1 repeat 437 455 IPR006597 -
Viun3g00048 671 Pfam Sel1 repeat 506 528 IPR006597 -
Viun3g00048 671 Pfam Sel1 repeat 355 386 IPR006597 -
Viun3g00048 671 Pfam Sel1 repeat 125 158 IPR006597 -
Viun3g00048 671 Pfam Sel1 repeat 392 422 IPR006597 -
Viun3g00048 671 Pfam Sel1 repeat 242 277 IPR006597 -
Viun3g00048 671 Pfam Sel1 repeat 540 573 IPR006597 -
Viun3g00048 671 Pfam Sel1 repeat 280 312 IPR006597 -
Viun3g00048 671 SUPERFAMILY HCP-like 223 349 - -
Viun3g00048 671 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 207 318 - -
Viun3g00048 671 MobiDBLite consensus disorder prediction 54 71 - -
Viun3g00048 671 SUPERFAMILY HCP-like 333 463 - -
Viun3g00048 671 Gene3D Tetratricopeptide repeat domain 317 431 IPR011990 GO:0005515
Viun3g00048 671 SUPERFAMILY HCP-like 114 190 - -
Viun3g00048 671 SUPERFAMILY HCP-like 435 574 - -
Viun3g00048 671 SMART sel1 504 539 IPR006597 -
Viun3g00048 671 SMART sel1 352 387 IPR006597 -
Viun3g00048 671 SMART sel1 315 351 IPR006597 -
Viun3g00048 671 SMART sel1 388 423 IPR006597 -
Viun3g00048 671 SMART sel1 124 159 IPR006597 -
Viun3g00048 671 SMART sel1 242 278 IPR006597 -
Viun3g00048 671 SMART sel1 540 575 IPR006597 -
Viun3g00048 671 SMART sel1 279 314 IPR006597 -
Viun3g00048 671 Gene3D Tetratricopeptide repeat domain 432 588 IPR011990 GO:0005515
Viun3g00048 671 MobiDBLite consensus disorder prediction 38 88 - -
Viun3g00048 671 Gene3D Tetratricopeptide repeat domain 207 316 IPR011990 GO:0005515
Viun3g00048 671 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 8 655 IPR044623 GO:0030433
Viun3g00048 671 Gene3D Tetratricopeptide repeat domain 108 201 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00048 K14026 - gmx:100787823 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00048 3 215410 219417 Viun3g00048 3 215410 219417 ECH