Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02960 ATGGCTGTGGCTATGTCTCTGTGTTTCGGGCTCTTGTCTTCCTCCGTTCTCCCTCCAGAGGCCCACGCTCTGAGCTTCACGAGGCCTTCGCGTTCTGCTTCTGCTTCTCCTTCTGGACTGCGCATGGTGCGAACCGTTACCTCTTGCACGGTCTCTCACTCCGAGCAAGGAACCCGCAAAATCCGTGGCATCATGAAACCCCGCACAGTCACCCCTGAAATGGCAGCTCTCGTCGGCGCTCTAGAGATTTCCAGAACCCAAGCCCTCAAACGCATTTGGGCTTATATCAAGGACAACAATCTTCAGGACCCTGCAGACAAGAGGACTATAATTTGTGATGAGAAGCTGAAGAAGATATTTGAAGGGAGAGATCGAGTTGGTATGCTGGACGTTGCTCGCTTGATTAGCCCTCATTTCCTTAAAACTGAAGTTTAG 435 0.5149 MAVAMSLCFGLLSSSVLPPEAHALSFTRPSRSASASPSGLRMVRTVTSCTVSHSEQGTRKIRGIMKPRTVTPEMAALVGALEISRTQALKRIWAYIKDNNLQDPADKRTIICDEKLKKIFEGRDRVGMLDVARLISPHFLKTEV 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02960 144 CDD SWIB-MDM2_like 68 139 - -
Viun2g02960 144 SUPERFAMILY SWIB/MDM2 domain 60 142 IPR036885 -
Viun2g02960 144 Pfam SWIB/MDM2 domain 66 139 IPR003121 -
Viun2g02960 144 Gene3D SWIB/MDM2 domain 58 144 IPR036885 -
Viun2g02960 144 ProSiteProfiles SWIB/MDM2 domain profile. 63 141 IPR003121 -
Viun2g02960 144 SMART swib_2 64 144 IPR019835 -
Viun2g02960 144 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 52 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02960 Viun-Chr2 33683113 33684153 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Viun2g02960 SWIB 4.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02960 - - gmx:100306198 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02960 2 33683113 33684153 Viun2g02960 2 33683113 33684153 ECH