Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02939 ATGGAGGGAAACGAAGGCGCAGCGAATGGTGATGGCGATGGCGATGGCGGCGATCGTCCATGGCAATCTTACCACACTGTTTACACAACCGCTAAAGCAGGAATGGAAGGGGTTGACAAGGAGAAAGTTCAGAGAGTAGTTTACGAAATGAGTAAAGGATCCAAATATTTTCAAAACGAGGAACGCAAGGAGGCTTTTATTAACCAGAAAATTCAGAACTTGCGAATTCAGTGTGCTAAGCTCACACAAGCAGACCTGGCCCACTATCGTAAGTTTTTATTATTACAGGTGGCTGATAGAAGAATTGTTGAGCTAGAAGCTTCGCGTGATCTTTCGAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCAGTGGAGACTTTAAGTAACCCTACATTACAGGGCAAGCCAATGGCTGTTGGGAGCATGTCCATGATATCTACTGCCAACTATGAGGCCCGAAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAATTAATCTTTGTTCCAACAGATTTCAAGAAGTATACTTACTATAGTGATTTGACTAGAAAAGTTTTCCGGATATACGACCCCAATTTCATTGCTGGTAGCCTGGACGAAGCATACCTTGATATAACTGAAGTTTGCAAAGAAAGGAATGTCAAAAGTGAAGAAATTGCCCAAGAACTCAGAGCTGGTGTTTATGAAGAGACCGGTCTCACTTGTAGTGCTGGAGTGGCACCAAATCGCTTACTTGCTAAGGTTTGTTCTGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGGATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACAGAACATATTTTAAAGGGAGTTTTTGAAATTAACACATGTGAGCAGATGCTGGAGAAGAGTTGCTACCTTTATGCACTTTTCTCTCAGCCAACAGCAGACTTTTTTTGCTCTGTAGGTTTAGGTCTTGGGCAAACAGATTCTCCCCAAGTAAGATTTCGGAAAAGTATTAGCAATGAAAGAACGTTTTCTGCCACTGAAGATGAGGTGCTATTGCATAAAAAATTGGTGGAGCTTGCTGAAATGCTATCGGCGGACATGCAGAAAGAGGGTCTGTGTGGGCGAACATTGACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGACCAGAGCTGTGACTTTACAAAAATACATCAGCTCAACTGAGGATATCTTGAAGCATGCTAAAAAGTTGCTAAAAGCTGAACTTCCTATTTCAGTAAGATTGATAGGCCTTAGAGTATCTCAGTTTAATGGAGACAAATGTAGTGTTACGCCTGATCCTACACAGAAGACCATTACCAACTTCATTACTTCCGGAGATGTCAATAGAAATTGTAGTTCTTTTCCAGATGTTGCAGATCGTGACTTTGTCAGTGATGCAGAAACCAATCTTTCCGTTGACAATCAGCAGCAGACAAGTCAACTTGATTGGAGAGATCCTTTTGTTGGTAACTATTTGTCAGATGGAGATTACCAAAGCTGTGTTCTCCAGAAAAATGATGGTATAGAAGAGGTACAAACACCTAGTAATGATGCTACAAGTTCTCACCACAGTGGATTTACAGAAGCGCTGGGATCTACTTCTTTCCAGGGGCAATTTGAAGGCATAAATGTGATGAATGAATCTAAGCTCCTGGAGGGTGCCAGTCTTAATTCTTGTTGTCAGGAGACGACAATGTTGTGGCTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTACCTCCAAGTTTTGTTGAGGAAAGATTGGAGCACTCCGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAACCATGTGTTCCGAGTGGAAGTCGGAATCAAAAGGATGGAATGAGTAGACAAAGCAAATCTAAGAAGCAAAAGTTGTCGCAGAAAGAAGGCAAATATACACCCATTGATTCTTTTTTTGTTAAAAAGTAA 2034 0.4154 MEGNEGAANGDGDGDGGDRPWQSYHTVYTTAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEAFINQKIQNLRIQCAKLTQADLAHYRKFLLLQVADRRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLQGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFRIYDPNFIAGSLDEAYLDITEVCKERNVKSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFEINTCEQMLEKSCYLYALFSQPTADFFCSVGLGLGQTDSPQVRFRKSISNERTFSATEDEVLLHKKLVELAEMLSADMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYISSTEDILKHAKKLLKAELPISVRLIGLRVSQFNGDKCSVTPDPTQKTITNFITSGDVNRNCSSFPDVADRDFVSDAETNLSVDNQQQTSQLDWRDPFVGNYLSDGDYQSCVLQKNDGIEEVQTPSNDATSSHHSGFTEALGSTSFQGQFEGINVMNESKLLEGASLNSCCQETTMLWLNDYKCSLCGIELPPSFVEERLEHSDFHLAEKLQKEESRIHQPCVPSGSRNQKDGMSRQSKSKKQKLSQKEGKYTPIDSFFVKK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02939 677 FunFam DNA polymerase kappa 253 344 - -
Viun2g02939 677 PIRSF DNA_pol_eta 225 433 - -
Viun2g02939 677 PIRSF DNA_pol_eta 107 229 - -
Viun2g02939 677 PIRSF DNA_pol_eta 461 677 - -
Viun2g02939 677 Gene3D - 132 180 - -
Viun2g02939 677 ProSiteProfiles Zinc finger UBZ3-type profile. 592 629 IPR041298 -
Viun2g02939 677 Hamap DNA polymerase IV [dinB]. 112 464 IPR022880 GO:0003887
Viun2g02939 677 MobiDBLite consensus disorder prediction 631 677 - -
Viun2g02939 677 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 21 675 - -
Viun2g02939 677 FunFam Polymerase (DNA directed) kappa 125 177 - -
Viun2g02939 677 ProSiteProfiles UmuC domain profile. 115 295 IPR001126 GO:0006281
Viun2g02939 677 Pfam impB/mucB/samB family C-terminal domain 351 451 IPR017961 GO:0003684|GO:0006281
Viun2g02939 677 SUPERFAMILY DNA/RNA polymerases 97 342 IPR043502 -
Viun2g02939 677 Gene3D - 349 454 IPR036775 GO:0003684|GO:0006281
Viun2g02939 677 FunFam DNA polymerase kappa subunit 27 122 - -
Viun2g02939 677 Gene3D - 28 119 - -
Viun2g02939 677 Coils Coil 57 77 - -
Viun2g02939 677 MobiDBLite consensus disorder prediction 649 664 - -
Viun2g02939 677 FunFam DNA polymerase kappa subunit 175 270 - -
Viun2g02939 677 FunFam DNA polymerase IV 348 455 - -
Viun2g02939 677 Gene3D - 271 344 - -
Viun2g02939 677 MobiDBLite consensus disorder prediction 1 21 - -
Viun2g02939 677 Pfam Ubiquitin-Binding Zinc Finger 596 629 IPR041298 -
Viun2g02939 677 CDD PolY_Pol_IV_kappa 116 448 IPR022880 GO:0003887
Viun2g02939 677 Gene3D - 120 270 IPR043128 -
Viun2g02939 677 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 349 446 IPR036775 GO:0003684|GO:0006281
Viun2g02939 677 Pfam impB/mucB/samB family 118 262 IPR001126 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02939 Viun-Chr2 33629961 33634896 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02939 K03511 - gmx:100816973 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02939 2 33629961 33634896 Viun2g02939 2 33629961 33634896 ECH