Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02618 ATGGGGTACAATTTGTTGTTGATTGGTGTGTTCTTGTGGAGTTCAATGGTTAGTCACAATGGATTAGCCACGATGGATGATGATGGGAAGTTGATGAGCTCCTCAGGCTCACCAAATTATGATTATGCAGACGCTCTTGGCAAAGCCATTTTGTTTTTTGAAGGACAACGCTCGGGGAAGTTACCCTCAAACCAAAGAGTGAAGTGGAGGGAAGACTCCGCTCTCTCTGATGGAAAACTTCAAAACGTGAATTTGATCGGAGGATACTACGATGCTGGTGATAACGTCAAGTTTGGATGGCCAATGGCGTTTGCTACGAGCTTATTGAGTTGGGCTGCTGTTGAGTACGAAAGTGAGATATCTTCGGTAAACCAGCTTGGTTATCTCCAAAGTGCTATCCGTTGGGGTGCAGACTTCATACTCAGAGCCCATACTTCCCCAACCACCCTCTACACACAGGTTGGAGATGGCAACGCTGATCACAATTGTTGGGAGAGGCCAGAAGACATGGATACACCAAGGACAGTGTATAAGATAGATGCTAATTCTCCAGGGACTGAAGCCGCAGCTGAGTCTGCTGCGGCTCTTTCTGCTGCTTCAATTGTATTCAGGAAAATAGATGCCAAGTATTCCTCCACGCTATTAAGCCATGCGAAAACACTGTTTGATTTTGCAGACAAGTACAGAGGTTCTTATTCCGGTTCTTGCCCATTCTATTGCTCGTACTCAGGTTACCAGGATGAACTGCTATGGGCTGCTGCATGGTTGTACAAGGCAAGTGGAGAAAGCAGGTATCTGACCTACATCATAGGTAACCAAGGATGGAGCCAGGCAGTGTCTGAATTCAGCTGGGACAACAAATTTGTTGGGGCTCAGACATTACTAACCGAGGAATTTTACGGTGGAAAAAAAGACCTGGGCAAAATTAAGACCGATGCTGAGTCATTTATATGTCGTGTGATGCCAGGAAGCAACTCTCAACAGATTAAAACAACTCCTGGTGGTCTTCTGTTTACTAGAGATAGTAGCAATTTGCAATATACCACGAGCTCGACCATGGTGCTATTCATTTTCTCTAGAATCCTAAACAGAAATCACATCAACGGAATCAATTGTGGCTCCGCGCATTTCACACCGTCTCAAATTACAGCCTTTGCCAAAACACAGGTGGACTACATACTGGGAAACAATCCGATGAAGATGTCGTACATGGTGGGATTTGGCAGCAAATACCCAAAGCAATTACATCACAGAGGCTCATCCATCCCTTCGATAAAAGTTCACCCAGCGAAGGTGGGTTGCAATGGTGGTCTCTCAGATTATTACAACTCTCCTAATCCAAATCCCAATACTCATGTGGGTGCCATTGTTGGAGGACCCGATTCAAATGACCGTTTCAATGATGCAAGATCTGACTATTCCCACACCGAGCCCACCACATACATGAATGCTGCTTTCGTCGCTTCAGTGTCTGCTTTGCTTGCCAAAACCTAA 1494 0.4538 MGYNLLLIGVFLWSSMVSHNGLATMDDDGKLMSSSGSPNYDYADALGKAILFFEGQRSGKLPSNQRVKWREDSALSDGKLQNVNLIGGYYDAGDNVKFGWPMAFATSLLSWAAVEYESEISSVNQLGYLQSAIRWGADFILRAHTSPTTLYTQVGDGNADHNCWERPEDMDTPRTVYKIDANSPGTEAAAESAAALSAASIVFRKIDAKYSSTLLSHAKTLFDFADKYRGSYSGSCPFYCSYSGYQDELLWAAAWLYKASGESRYLTYIIGNQGWSQAVSEFSWDNKFVGAQTLLTEEFYGGKKDLGKIKTDAESFICRVMPGSNSQQIKTTPGGLLFTRDSSNLQYTTSSTMVLFIFSRILNRNHINGINCGSAHFTPSQITAFAKTQVDYILGNNPMKMSYMVGFGSKYPKQLHHRGSSIPSIKVHPAKVGCNGGLSDYYNSPNPNPNTHVGAIVGGPDSNDRFNDARSDYSHTEPTTYMNAAFVASVSALLAKT 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02618 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Viun2g02618 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
Viun2g02618 497 Pfam Glycosyl hydrolase family 9 42 488 IPR001701 GO:0004553|GO:0005975
Viun2g02618 497 FunFam Endoglucanase 38 497 - -
Viun2g02618 497 Gene3D - 37 497 IPR012341 GO:0005975
Viun2g02618 497 PANTHER ENDO-1,4-BETA-GLUCANASE 24 494 - -
Viun2g02618 497 SUPERFAMILY Six-hairpin glycosidases 39 495 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02618 Viun-Chr2 31986118 31988763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02618 41 497 Glycoside Hydrolase AT4G23560 72.648 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02618 - - gmx:547834 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02618 2 31986118 31988763 Viun2g02618 2 31986118 31988763 ECH