LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g02615	ATGAACGAGAATCAACCTCAATTACTCTCTAAGATTGCCACCGGCAACGGCCATGGTGAGGACTCTCCTTACTTTGATGGATGGAGGGCCTATCAAGATGATCCCTTCCATCCCATCAAGAATCCTAACGGGGTTATCCAAATGGGTCTTGCAGAAAATCAGCTTGCTTCGGAGTTGGTTCAGCATTGGTTAGCGAATAACCCAGGGGCTTCCATTTGCACACGAGAAGGAGTGCGTGATTTCAAGGCCATTGCTAACTTTCAGGATTATCATGGTCTACCGGAGTTCAGAAATGCAGTGGCTAAATTCATGGGAAGAACGAGAGGAAATACAGTAACGTTCGACCCTGAGCGTATTGTTATGAGCAGTGGAGCAACTGGAGCACACGAGGTCACTATGTTTTGTTTGGCTGATCCCGGTGACGCATTTTTGGTCCCCACACCTTATTATGCAGGTTTCGACAGGGATTTACGGTGGAGAACGGGGGTTCAACTTGTTCCGGTTATCTGCGAAAGCTCTAACGATTTCAAGTTGACAAGGAAAGCGTTGGACGAGGCGTACGAGAAAGCCAAGGAGGACAACATCAGAATAAAGGGGTTGCTGATTACGAATCCATCAAACCCATTGGGAACTGTGATGAACCGACAAACTCTAAGAACAGTGCTGGGTTTCATCAACGAAAAACACATCCACCTAGTAAGCGACGAAATATACGCGGGTACGGTTTTCTGCTACCCCGGATTCACGAGCATCGCGGAGGTAGTAGAGGAAGACAAAGACATGGAGTGTGACCGTGACCTTATCCACATTGTTTATAGTCTTTCCAAGGACATGGGGTTCCCTGGTTTCAGAGTTGGCATCATATACTCTTACAACGACGCAGTGGTGAGTTGCGCCCGCAAAATGTCTAGCTTTGGGTTGGTGTCGACGCAGACGCAGTATCTGATGGCATCGATGCTTTCTGATGACGAGTTCGTGAAAGGGTTTCTGGAAGAGAGTGCAAAGAGGCTTGCGCAAAGGTATGGGGTTCTTTGTAGGGGTCTTGAGCAGGTTGGCATAAAGTGCTTGGCGAGCAATGGTGGACTTTTTGTGTGGATGGATTTGCGTGGTCTTTTGAAGAAGGCAACGTTTGAGGCGGAAATGGAACTGTGGAGAGTGATCATTCACCAGGTTAAGATCAATATTTCACCTGGTTCTTCCTTTCACTGCTCTGAACCAGGGTGGTTCAGGGTCTGCTATGCCAACATGGACGATAGAGCCGTGGAGGTTTCTCTGGCGAGAATGCGCAGCTTCGTGCGTCAGAACACCGAAACCAAGAAGAAATCTTGCAGCTACAGAAAGTTGAGTCTAAGCTTCTCATCCAGAAGGTTGGATGAGTTTTTGGTGTCACCTCACTCACCTTTTCCTCAGTCACCTCTGGTTAAAGCCTCAACTTGA	1437	0.4788	MNENQPQLLSKIATGNGHGEDSPYFDGWRAYQDDPFHPIKNPNGVIQMGLAENQLASELVQHWLANNPGASICTREGVRDFKAIANFQDYHGLPEFRNAVAKFMGRTRGNTVTFDPERIVMSSGATGAHEVTMFCLADPGDAFLVPTPYYAGFDRDLRWRTGVQLVPVICESSNDFKLTRKALDEAYEKAKEDNIRIKGLLITNPSNPLGTVMNRQTLRTVLGFINEKHIHLVSDEIYAGTVFCYPGFTSIAEVVEEDKDMECDRDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVSCARKMSSFGLVSTQTQYLMASMLSDDEFVKGFLEESAKRLAQRYGVLCRGLEQVGIKCLASNGGLFVWMDLRGLLKKATFEAEMELWRVIIHQVKINISPGSSFHCSEPGWFRVCYANMDDRAVEVSLARMRSFVRQNTETKKKSCSYRKLSLSFSSRRLDEFLVSPHSPFPQSPLVKAST	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g02615	478	Pfam	Aminotransferase class I and II	46	424	IPR004839	GO:0009058\|GO:0030170
	Viun2g02615	478	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	273	286	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Viun2g02615	478	Gene3D	Aspartate Aminotransferase, domain 1	34	427	IPR015422	GO:0003824
	Viun2g02615	478	Gene3D	-	68	322	IPR015421	GO:0003824
	Viun2g02615	478	SUPERFAMILY	PLP-dependent transferases	18	434	IPR015424	-
	Viun2g02615	478	CDD	AAT_like	86	429	-	-
	Viun2g02615	478	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	230	253	-	-
	Viun2g02615	478	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	48	74	-	-
	Viun2g02615	478	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	194	218	-	-
	Viun2g02615	478	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	140	161	-	-
	Viun2g02615	478	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	81	97	-	-
	Viun2g02615	478	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	118	138	-	-
	Viun2g02615	478	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	267	291	-	-
	Viun2g02615	478	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	299	322	-	-
	Viun2g02615	478	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	9	433	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g02615	Viun-Chr2	31962778	31965416	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g02615	K20772		-	gmx:100793020	849.736

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun2g02615	2	31962778	31965416	Viun2g02615	2	31962778	31965416	ECH
	Viun2g02615	2	31962778	31965416	Viun3g00531	3	3231080	3233613	PCT