Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02554 ATGGCAGTCACAAAAAGCCTCTCATTGTTTCTCTTCGTCGCCATAAGCTGCACCGTCGCAGCCCAGGCAGCGACCTTCAACGTCACAAACAGTTGCAACTTTACGGTGTGGGCCGCCGCCGTGCCCGGTGGCGGCGTACGGCTGAACCCTAACGAGTCATGGAGCATCGAAGTGGCGAACGGCACCACGGGAGGACGCATTTGGGGCCGGACAAACTGCACCTTCGACAACGCGGGACGCGGTAATTGCTTAACCGGCGACTGCGGCGGCGTTCTCGTGTGCAACAACACTTACGGTACACCCCCGAACACGCTGGTGGAATTCGCGTTGAACCAGTACAACAACCTCGACTTCTACGACATCTCCCTGGTAGATGGTTTCAACCTTCCGGTTCAGTTGAACCCGACATATAACTGCAGCAGCGTAAAATGCGCCGCCGACGTGATCGGAGAGTGCCCCACTCAGCTGCAGGCTCCGGGCGGTTGTAACAACCCTTGCACGGTTTTCAACACGACGGAGTACTGTTGTACCTCCGGTTCTTCGGGGTGCGGTCCCACCGATTATTCCAAGTACTTCAAGGAGAAGTGCCCAGATGCATACAGTTACCCCATGGATGATGCCACCAGCACATTCACTTGCAGGGGAGGATCCGATTATAGGGTTGTGTTTTGCCCTTAA 678 0.5605 MAVTKSLSLFLFVAISCTVAAQAATFNVTNSCNFTVWAAAVPGGGVRLNPNESWSIEVANGTTGGRIWGRTNCTFDNAGRGNCLTGDCGGVLVCNNTYGTPPNTLVEFALNQYNNLDFYDISLVDGFNLPVQLNPTYNCSSVKCAADVIGECPTQLQAPGGCNNPCTVFNTTEYCCTSGSSGCGPTDYSKYFKEKCPDAYSYPMDDATSTFTCRGGSDYRVVFCP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02554 225 PIRSF PR5 1 225 IPR001938 -
Viun2g02554 225 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Viun2g02554 225 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Viun2g02554 225 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Viun2g02554 225 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Viun2g02554 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Viun2g02554 225 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Viun2g02554 225 SUPERFAMILY Osmotin, thaumatin-like protein 23 225 IPR037176 -
Viun2g02554 225 SMART tha2 26 225 IPR001938 -
Viun2g02554 225 ProSiteProfiles Thaumatin family profile. 23 225 IPR001938 -
Viun2g02554 225 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Viun2g02554 225 PANTHER OS03G0233200 PROTEIN 10 225 IPR001938 -
Viun2g02554 225 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Viun2g02554 225 Gene3D Thaumatin 23 225 IPR037176 -
Viun2g02554 225 Pfam Thaumatin family 30 225 IPR001938 -
Viun2g02554 225 FunFam Thaumatin I 24 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02554 Viun-Chr2 31675173 31676108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02554 6 225 Receptor kinase-like Gene Family AT5G38280 36.585 3.06e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02554 - - gmx:100037479 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02554 2 31675173 31676108 Viun3g00619 3 3801111 3801870 PCT