Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02527 ATGGATGATGAGTTTTTCTACGGAAACCAAGCGCCATCTGGTGTCATTAAAGCGATAAATTTTGATGTCTTAACTGAAAATGATATAGAGAAAGTCTCTGTTTTGGAGATAAATGCAGCCGGGCAGGTCACTGGGTCTACTTTGGGACTTCCAAATACATCTGACGAGTGTGCCACTTGTGGTTCTAAAGACAAAAAGTTTTGTGAAGGTCATTTTGGAGTTATCAGATTTCCTTTTCCCATACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAATAAGATTTGCCCTGTTTGTAAATCTATTCGTCATAAATCTAAGGGTGCTCAATTAATCTTTGGAATCAAGCAGTCTATCAATTGCAAATATTGTTCTGGAAATGGGGTGGGCCGTTATCCAGCAATGAAGTTTAAATTTTCGTCCAATGATCTCTACAGAAGAACAGCAATTATTGTTGAAGTGAATTATAAGTCTTCAAAGAAAACTTTGGGACGAAGCCTGCCACCTGATTATTGGGATTTTATTCCTTATGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGGGTTTTATCACCAGGACAGGTTATTTCTTTGTTGAATGATGTTGATCCGAACTTCATTGAAAAATATATTCCAAGAAAAAATTTGATCAGTCTTAATTGCTTCCCAGTGACTCCAAATTGTCATCGTGTAACAGAAGTCCCTTATGCAATTTCTAATGGAAACCGATTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGAATTTCTAAGGCAAGATGCTGAACCCTAAATCCTGATAAAACACCTAATACTATTTTTGCTGATATCCAAAAAAAAGTTGCAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTACGTTCCGTACTGTGGTTGTTGGTGATCCATACCTTGAGCTCAATGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTTAACAGGCAGAATTTGGAAAAGATGCTTTATTGTTGTGAGCTACGCCTGTTAGAGAAGGGAGAAATAATGGTTTGCAGAAAGGGTAGTTCAATTCATCTGTTTAAAAAGGAAGATCTACAGATAGGAGACCGAATTTATAGGCCTCTTTGTGATGGGGATAAAGTTCTTATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCTCTCTCTGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGCATTAACCCACTTTGTTGTTCTCCGCTTCGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAATTAGTGCAAGAGTTGAGCTTAACGAGCTTGTTGCTTTAGATAGACAATTGTTTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCCGAGGATAGTTTGACTGCTGCATATTTGCTACTGGAAGATGGGGTCATTTTAGATGTTTACCAGATGCAGCAGCTTCAAATGCTTTGTGACAAAGGTTTAGCTCCTCCTTCAATTGTAAAAGCTCCTTCAAGTAAAAGCTCATTTTGGAGTGGCAAACAATTGTTTAGCATGCTCTTGCCTTCTGATTTTGACTATTCCTTTCCTTCGGATGGTGTTGTTGTTAGTGATGGGGAGCTTGTATCTTCTTTTGAGGCTTCTGGATGGTTACGTGATTCTGATTGCAATGTTTTCCAGAGTCTTGTGGAACATTTTCAAGGGAAATCTCTAGACTTTTTGTTTGCTGCGCAGAATGTTTTGTGTGAATGGTTATCTATGATTGGTTTTAGTGTTTCACTCTCAGATTTGTACCTCTCTTCTGATTCCTATGCACGAAAAAACATGATTGAGGAAATATTTTATGGTTTACAAGATGCAGAAAAGGCATGTAATTTCAAGCAATTATTGTTAGATTGCTATTGTGATTTTTTATCTGGAAATCATGAAGAAGAGAGTGAAAAATCTATGACTGTTGATGCAGATAGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAAGCATCAGTTGATGCTTTTAGGCAAGTTTTTCGCAATATTCAAAGTTTAGCTGACAAATATGCATGTACAGACAATACTTTTCTTGCCATGAATAAGGCTGGAAGCAAGAGTAGTTTAGTGAGATTAGCGCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTATCTTACAGACTACCCCGTCATCTTTCATGTCCTGCTTGGAATAGTGAAAAGGGGCTTGATTCAATCCAGATACACTCTGGTACCTTTGAATCTGTTCAGTCTTACATTCCATGTGCTGTGGTCAAAAGCTCATTTCTAACCGGGTTGAATCCACTTGAATGTTTTGTTCATTCTGTGTCAGTCCGTGCTAGTGGTTTCAGTGAAAATGCAGACGTTCCTGGAACATTAACACGAAGATTGATGTTCTTCATGCGTGATTTGTTTGCTGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATACTGAAGAGAACTCTTCATGTGATAGAAGTTTCCAAGAGTATGCTATTGGTGGCGAACCAGTTGGGGCACTTTCTGCTTCCGCAGTTTCAGAAGCTGGATACAGTGCTTTGGATCAACCAGTTAGTCTACTTGAAACGTCACCTTTGCTGAATTTGAAAAATGTTCTTGAATGTGGTTCAAGGAAAAAAAGTGGTGACCAGTCTGTGACTTTATTTTTTTCTGAAAAAGTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTTTAGAAGTTAAGAATTATTTGGAAAGATTGCTGTTCTCAAAAATTGTTTCTACTGTGATGATAATCACCCGACATGATAGCAGCAACCTAGAGAAATGCAGTCCCTGGGTCTGCCACTTTCATTTAGACAAGGAAATTCTAAAGAGAAGAGAGTTGAAAGTGCATTCTATCATTGACTGTCTTTACGAGAGATATTACTCCCAGAGAAAAGAACTAAAAGTCTCTTTTACCAACTTGAAAATATCAAGCAACAGTAAGTGTTCCGGTGATTCCACGGCTAAGGATGGTGAAGACACTTTTGTAGATAAAGAAGACGGTGATGATTGCATTACGGTCACAATTGTTGAAAATTCTGAGAATCCTATACAACTGGATTCTGTTCGGGACTTGATGATACCTTTTTTTCTAGAAACAACAATAAAAGGATTTATGGACATCAAGAAGGTTGATATTCTCTGGAATAATCAATCAAAAGTAACAAACTCTTACAATGGTTCTTCTGGTGAACTGTACTTGAGGGTTATTGTGGCCAGCGAGGGTAACACTGGAAGGTTCTGGGGTGTACTTGTAAATCATTGTCACAAGATAATGCAGCTAATTGACTGGCCACGGAGTCATCCAGACAACATTAATTATATCTCATCAGCCTTTGGAATTGATGTAGCCTGGCAATATTATTACAAGAGTTTGGCATCTGCAATATGTGATACTGGAAAGTCCATCCTTCCTAAGCATCTGCGTCTTCTTGCCAATAGTCTGTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACTGCAACGACAACATGCGTCCGTTTCAACACCGTTCGTGCAAGCATGCTTTTCCAACCCAGGTAGGAGCTTTATAAAAGCTGCCAAGTCTGGAGTTATGGATAATCTCCAGGGCAGCCTGGATGCATTGGCTTGGGGAAACTGTCCCCCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGGGACATGAGGTTGCCAAGTCTGTAGATGTGTATAAGCTGCTAGAAGCCAGTTTTGACAAGCCGAACAATAAGATTGGTGTATATTCTCACAACTATTCATCTGACAAATGTGGTTCTGAGTTCAGGCATAAAAAAGGTTATGCCTTTAAAGAGGGAAAACAGTGGAAAAACATTGTAAGAAATTTTGTGACGGTAAATGATATTCAGGACCTGACTAAATCTTCAAGGTGCATATTGAACAAGTATGCAATTGATGAGCTGGTAAGTGAGTTTGACAGATCTACAATGCTAAGAGTTCTGAATTTTCATCCTCGTAGAAGTGAGAAGTTAGGTACTGGACCACAGGACATTAAGGTTGGATGGCATCCTAAATTTAAGGATAGCCGCTGCTTCCATATAGTACGAACTGATGGAACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTCGTGCTCTTGAAATCGTTAATCCAAAAATGTCGAGGATCCAGAAGAAAAAATGGTCAGGACGTGATGACACAAAAAATGGTGGCAGTCTCGATGCAGACTACCAGAACAGAGAAGTCGTGTTTTCTAGTGGGAAGTGTTAG 4470 0.3872 MDDEFFYGNQAPSGVIKAINFDVLTENDIEKVSVLEINAAGQVTGSTLGLPNTSDECATCGSKDKKFCEGHFGVIRFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLIFGIKQSINCKYCSGNGVGRYPAMKFKFSSNDLYRRTAIIVEVNYKSSKKTLGRSLPPDYWDFIPYDAQQEENYVNRRVLSPGQVISLLNDVDPNFIEKYIPRKNLISLNCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKARCXTLNPDKTPNTIFADIQXKKVAENACNSSGLRWIKDVVLGKRNDSTFRTVVVGDPYLELNEIGIPCHIAESLQVSEYVNRQNLEKMLYCCELRLLEKGEIMVCRKGSSIHLFKKEDLQIGDRIYRPLCDGDKVLINRPPSIHQHSMIALSVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSISARVELNELVALDRQLFNGQSGRNLLSLSEDSLTAAYLLLEDGVILDVYQMQQLQMLCDKGLAPPSIVKAPSSKSSFWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDCNVFQSLVEHFQGKSLDFLFAAQNVLCEWLSMIGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEKACNFKQLLLDCYCDFLSGNHEEESEKSMTVDADSLNYERQISAALSQASVDAFRQVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCPAWNSEKGLDSIQIHSGTFESVQSYIPCAVVKSSFLTGLNPLECFVHSVSVRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYDTEENSSCDRSFQEYAIGGEPVGALSASAVSEAGYSALDQPVSLLETSPLLNLKNVLECGSRKKSGDQSVTLFFSEKVGKQRHGFEYAALEVKNYLERLLFSKIVSTVMIITRHDSSNLEKCSPWVCHFHLDKEILKRRELKVHSIIDCLYERYYSQRKELKVSFTNLKISSNSKCSGDSTAKDGEDTFVDKEDGDDCITVTIVENSENPIQLDSVRDLMIPFFLETTIKGFMDIKKVDILWNNQSKVTNSYNGSSGELYLRVIVASEGNTGRFWGVLVNHCHKIMQLIDWPRSHPDNINYISSAFGIDVAWQYYYKSLASAICDTGKSILPKHLRLLANSLSASGEFVGLNAKGMALQRQHASVSTPFVQACFSNPGRSFIKAAKSGVMDNLQGSLDALAWGNCPPMGTSGLFDIIYSEKGHEVAKSVDVYKLLEASFDKPNNKIGVYSHNYSSDKCGSEFRHKKGYAFKEGKQWKNIVRNFVTVNDIQDLTKSSRCILNKYAIDELVSEFDRSTMLRVLNFHPRRSEKLGTGPQDIKVGWHPKFKDSRCFHIVRTDGTVEDFSYRKCILRALEIVNPKMSRIQKKKWSGRDDTKNGGSLDADYQNREVVFSSGKC 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02527 1490 Gene3D RNA polymerase II, clamp domain 8 124 IPR044893 -
Viun2g02527 1490 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 10 1292 - -
Viun2g02527 1490 FunFam DNA-directed RNA polymerase subunit 491 629 - -
Viun2g02527 1490 Gene3D - 319 490 - -
Viun2g02527 1490 Pfam RNA polymerase Rpb1, domain 1 16 254 IPR007080 GO:0003677|GO:0003899|GO:0006351
Viun2g02527 1490 Gene3D - 633 814 IPR038120 -
Viun2g02527 1490 Pfam RNA polymerase Rpb1, domain 2 324 481 IPR000722 GO:0003677|GO:0003899|GO:0006351
Viun2g02527 1490 Pfam Protein of unknown function (DUF3223) 1372 1443 - -
Viun2g02527 1490 PANTHER DNA-DIRECTED RNA POLYMERASE 20 1290 IPR045867 GO:0003899|GO:0006351
Viun2g02527 1490 Pfam RNA polymerase Rpb1, domain 3 488 635 IPR007066 GO:0003677|GO:0003899|GO:0006351
Viun2g02527 1490 Gene3D RNA polymerase ii 357 409 - -
Viun2g02527 1490 SMART rpolaneu7 218 511 IPR006592 GO:0003677|GO:0003899|GO:0006351
Viun2g02527 1490 Pfam RNA polymerase Rpb1, domain 4 705 762 IPR007083 GO:0003677|GO:0003899|GO:0006351
Viun2g02527 1490 Gene3D - 1353 1446 - -
Viun2g02527 1490 CDD RNAP_IV_RPD1_N 24 861 IPR040403 -
Viun2g02527 1490 Gene3D RNA polymerase Rpb1, domain 3 491 632 IPR042102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02527 Viun-Chr2 31514295 31527239 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02527 K16250 - gmx:100796185 2437.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02527 2 31514295 31527239 Viun2g02527 2 31514295 31527239 ECH